Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq93 149 1e-30 seq131 131 4e-25 >seq93 Length=1192474 Score = 149 bits (164), Expect = 1e-30 Identities = 308/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||| | | ||||| || || || | ||||| || |||| Sbjct 325373 TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTC 325314 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | | || |||||| Sbjct 325313 TGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAG 325254 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| ||||||||||| || ||| | || | ||| || | ||| || Sbjct 325253 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGTGC-CTCCTCTATGATCTTCT 325195 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||| || | ||| || ||| | || || | || || || || | Sbjct 325194 CCGCGTCAAGCTCGACGAGTCG---CGCGTCCGCGAGATAGTCGCCGACGCCGTCGATAT 325138 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || || ||| | |||||||| | || ||| ||| | ||||||||| | || Sbjct 325137 AGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGGCATGAACGGCGTGCT 325078 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 325077 CATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCCACAAGAA 325018 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | ||||| || | || |||||||| || || || || || || || Sbjct 325017 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTTATCTCCCTCCAGGGCAAGAC 324958 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || ||||| Sbjct 324957 CAACTTCTTCGAGAAGCGCGTCGGCGAGTATCA 324925 >seq131 Length=616296 Score = 131 bits (144), Expect = 4e-25 Identities = 304/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || |||||||| ||||| | | ||||| || || ||| | || || || ||| Sbjct 272885 TTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTTC 272826 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 272825 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 272766 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 ||||| |||||||||||||| ||| | |||| ||| ||| | || || Sbjct 272765 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGC-CTTCTCTACGACCTCCT 272707 Query 243468 CCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||| || | || || ||| | ||| || | || || || || | Sbjct 272706 CCGCGTCAAGCTGGACGAGTCC---CGCGTCCGCGAGATCGTCGCCGACGCCGTCGACAT 272650 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| || ||| | |||||||| |||| ||| || | ||||||||| | || Sbjct 272649 CGAGCGCGAGTTCGTCTGCGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCT 272590 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| | |||||| |||| ||||| ||||||||| | | || || | || | |||| Sbjct 272589 TATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCACAAGAA 272530 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 |||||||| | ||||| || | || ||||||||||| || || || || || || Sbjct 272529 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGAC 272470 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 272469 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 272437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102713456159100