Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq93 131 2e-25 seq131 129 7e-25 seq68 105 8e-18 seq143 100 3e-16 seq8 93.3 5e-14 seq49 87.8 2e-12 >seq93 Length=1192474 Score = 131 bits (144), Expect = 2e-25 Identities = 309/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || ||||||||||||||||| ||||| || | | | |||| |||||| Sbjct 324928 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATC 324987 Query 125819 AAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 | || || ||||| | ||| | || || ||| ||| | | |||| | Sbjct 324988 CAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTGTGGCCC--AGCGCCATGAGCA 325042 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | || || | |||| |||| ||||||| | ||| | | |||||| |||| || Sbjct 325043 GGCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCG 325102 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 || ||||||||||| ||| |||| | ||| || || ||||| || || || Sbjct 325103 CGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCT 325162 Query 125994 CGTGAATG-GTGTCCACCCCAGGTCTATTGCGCA-AAG-TCTT-GAAGAGTTCCACGGCA 126049 || | | | | | | | || | | ||| | ||| || | || ||| |||| || Sbjct 325163 CGCGGACGCGCGACTCGTCGAGCTTGAC-GCGGAGAAGATCATAGAGGAGG--CACG-CA 325218 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| ||||||||||| ||||||||||| || || ||||| || || ||| Sbjct 325219 AAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGC 325278 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || || ||||| | |||||| || || || || || ||||| |||||||| ||| Sbjct 325279 ATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCC 325338 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || |||||||| | ||| ||||| || ||| Sbjct 325339 TCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 325374 >seq131 Length=616296 Score = 129 bits (142), Expect = 7e-25 Identities = 307/456 (67%), Gaps = 16/456 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 272439 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCAT 272498 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| ||| || | || || Sbjct 272499 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTGTGCCCCAAAGCCATT--AGC 272553 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 || || || | |||| |||| | ||||| ||| | | |||||| |||| ||| Sbjct 272554 AGGCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGT 272613 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 || || |||||||| ||| |||| | ||| || || ||||| || ||||| Sbjct 272614 GCGCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 272673 Query 125993 GCGTGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTTGAAGAGTTCCACGGCA 126049 || | | | | | | |||| | | ||| | | ||| | ||| | ||| | Sbjct 272674 TCGCGGACGCGGGACTCGTCCAGCTTGAC-GCGGAGGAGGTCGTAGAGAAGGC-ACG-CG 272730 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| || |||||||| ||||||||||| || || |||||| || || ||| Sbjct 272731 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 272790 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || || ||||| | |||||| || || || || || ||||||||||| || ||| Sbjct 272791 ATGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGCCC 272850 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || || |||||||| | |||||||| || ||| Sbjct 272851 TCGACGCAGGCGAACGCGACAAGACGCTCGGCGAAG 272886 >seq68 Length=1664768 Score = 105 bits (116), Expect = 8e-18 Identities = 250/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || || || || | |||||| ||||| || || || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || |||| || || || | ||||| ||||||||||||||||| |||||||||| | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTGAGG 281408 Query 10910 GTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCA--CCCGCACTGCGTTGCTTACCGA 10964 || || || | ||||||||| | | | |||||| || | |||| || || | Sbjct 281409 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTT-----CCAA 281463 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAA 11022 | || ||||||||||| | || || || || || ||| || ||| |||| ||| Sbjct 281464 CCGCATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGC--CTTCTTAAA 281521 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGA 11082 | ||| ||||| | |||||| ||||| |||||||| |||||||| | | | | Sbjct 281522 CAGATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG- 281580 Query 11083 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 | || | || ||| || || | ||| || || || ||| ||| || | ||||| | Sbjct 281581 ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTAC 281640 Query 11142 CCGTCCCAGG 11151 | |||||||| Sbjct 281641 CAGTCCCAGG 281650 >seq143 Length=511882 Score = 100 bits (110), Expect = 3e-16 Identities = 258/392 (66%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 287887 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTAGCGAGGTCGGCGCCGCTGAACCCG 287828 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | | | || ||| ||| ||| |||||||| | | Sbjct 287827 GGCGTGCGCATGGCCACCACATTGAGGGACACGTCGGGGTCCAGCTTCTTGTTGGAGCAG 287768 Query 10730 TGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGA 10789 || || | |||| ||| || |||||||| || || ||| ||| || || Sbjct 287767 TGCACCTTGAGGATCTCCTCACGGCCGCGCACGTCAGGGAGCCCGACGCTGACCTGCCGG 287708 Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 || ||||| || |||||||| || ||| |||| ||||| || ||||| || || || Sbjct 287707 TCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCCGGCCGGTTAGTGGCGGCA 287648 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || || | | ||| | ||| | || || |||||||| |||| || || |||| Sbjct 287647 ATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCCGTCAGCAGCTGGTTGAGT 287588 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCGACG 10966 || || || || ||||||||| | | ||| || | | ||| ||| | |||||| Sbjct 287587 GTCTGCTCCCGCTCATCATTCCC---CCCACCGATGCCGGTGCCGCGCTGCCTGCCGACG 287531 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGG 10998 ||||| || || |||||||| |||| ||||| Sbjct 287530 GCGTCGATCTCGTCGATGAACACGAGGCACGG 287499 >seq8 Length=5380884 Score = 93.3 bits (102), Expect = 5e-14 Identities = 275/420 (65%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || |||||||| | || || || || || || ||| || | |||| Sbjct 175545 ACGGTGACCTGCCGATCAAACCTCCCAGGCCGTAGAAGAGCCGAGTCCAGAACATCAGGC 175486 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || || | |||| || || | | | ||||||| |||||||| ||| Sbjct 175485 CTGTTGGTGGCAGCAAGCACAATGACACCGCTGTTGCCGGCAAAGCCGTCCATCTCCGTC 175426 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTG 10951 | || || || ||||| || || | || || || | |||| || |||| Sbjct 175425 AGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACC---ACCAAGGCCGGCACCA 175369 Query 10952 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGG 11011 || ||| | || |||||||| || ||||| ||||| || || ||||| || | | Sbjct 175368 CGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGACAATGCACGGCGCCTTGGCCTTG 175309 Query 11012 GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAA 11071 || || |||| || | ||| || ||||||||||| ||||| | || || || Sbjct 175308 GCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGACACCGACAAAGAGCTCGACGAAC 175249 Query 11072 TTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 11131 | || ||| | || || |||||| || || || || |||| ||| || || ||| Sbjct 175248 TCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGCGCAAGG 175189 Query 11132 AGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 || || || || |||||||| || |||| | |||| | | | |||||| |||| || Sbjct 175188 AGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGA-GGCATCCCTTGGGGATCTTGGCTCC 175130 Score = 82.4 bits (90), Expect = 9e-11 Identities = 245/370 (66%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| || || | || | || ||| | |||||| ||||| || || || Sbjct 1265137 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 1265078 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 || |||| || || || | ||||| ||||||||||| ||||| || || || | | Sbjct 1265077 ATAACAATTATTCCAGTGTTCCCTTCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAGG 1265018 Query 10910 GTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCA--CCCGCACTGCGTTGCTTACCGA 10964 || || || | ||||||||| | | | |||||| || | |||| || || | Sbjct 1265017 GTCTGCTCCCTTTCATCATTTCCACCACCGATACCAGTTCCTCTCTGCCTT-----CCAA 1264963 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAA 11022 | || ||||||||||| | || || || || ||| ||| || ||| |||| ||| Sbjct 1264962 CAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAA 1264905 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGA 11082 | ||| ||||| | ||||| ||||| |||||||| ||||| || | | | | | Sbjct 1264904 CAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCCG- 1264846 Query 11083 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 | || | || ||| || || | ||| || || || || ||| || | ||||| | Sbjct 1264845 ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTAC 1264786 Query 11142 CCGTCCCAGG 11151 | |||||||| Sbjct 1264785 CGGTCCCAGG 1264776 >seq49 Length=2122476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 257/391 (66%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| | ||||| ||| || | ||| || || | |||||| || ||| || Sbjct 1962239 CGGCCGGCGAGAATGGCGGCCTCGTTCATGAGATTGGCGAGGTCGGCGCCGCTGAACCCG 1962298 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGC- 10728 | ||| || | || | ||| || ||| ||| ||| |||||||| || || Sbjct 1962299 GGCGTGCGCATGGCCACCACGTTGAGGGACACGTCGGGGTCCAGCTTCTTGT-TCGAGCA 1962357 Query 10729 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 10788 ||| || | |||| |||||| |||||||| || || ||| ||| || || Sbjct 1962358 GTGCACCTTGAGGATCTCCTCGCGGCCGCGCACGTCAGGAAGCCCGACGCTGACCTGCCG 1962417 Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 || ||||| || |||||||| || || |||| ||||| || |||||| || || || Sbjct 1962418 GTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCGGC 1962477 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | || | | ||| | || | || || |||||||| |||| || || |||| Sbjct 1962478 AAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTGAG 1962537 Query 10909 GGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGG 10967 || || || || || || || | | || | |||| | ||| ||| | ||||||| Sbjct 1962538 CGTCTGCTCCCGCTCGTCGTTACCCCCGCCGATG-CCCGTGCCGCGCTGCCTCCCGACGG 1962596 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGG 10998 |||| || || ||||||||||| | ||||| Sbjct 1962597 CGTCGATCTCGTCGATGAAAACAAGGCACGG 1962627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597265594880880