Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq45 95.1 1e-14 seq4152 91.5 1e-13 seq8 89.7 5e-13 seq5 87.8 2e-12 seq93 84.2 2e-11 >seq45 Length=2202424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || ||| || ||| ||| || Sbjct 1622994 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGCCCATCCTC 1622935 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | || | |||||||||||||| || ||||| || || || || Sbjct 1622934 CAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1622875 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | |||||| |||||||| || ||||| || | || | Sbjct 1622874 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCT 1622816 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || || || || || ||||| Sbjct 1622815 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1622785 >seq4152 Length=1438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || ||||| || || ||||| ||||| || || ||| | Sbjct 338 CCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 397 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||||||||| Sbjct 398 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGG 457 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 458 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 516 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| ||||| || || || || || || || |||||| Sbjct 517 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 565 >seq8 Length=5380884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| || || || Sbjct 978703 ATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 978762 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| || |||||||||||| Sbjct 978763 GCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGC 978822 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || ||| || | || | || | ||||| || ||||| Sbjct 978823 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCAATCGTGTCAGATGACTC 978881 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || |||||||| || || || |||||||| ||||| Sbjct 978882 AACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 978932 >seq5 Length=5768508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||||||||| | | ||| || |||||||| || ||||| ||||| || || ||| Sbjct 1511111 TCCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1511052 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | || ||||| ||| | || | || |||||||||||||| Sbjct 1511051 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGCGG 1510992 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | |||||| || ||||| | Sbjct 1510991 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCA 1510933 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || | || | || || || || || || || || || || |||||| Sbjct 1510932 CCTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 1510883 >seq93 Length=1192474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 138380 GCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAG 138439 ||||||||||| | ||| | ||| |||||||| ||||| || |||||| || || || Sbjct 325212 GCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 325271 Query 138440 CCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaa 138499 |||||||||| ||| |||||| | |||||||| |||| |||||||| || Sbjct 325272 GCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAA 325331 Query 138500 aaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538 | ||| ||||| ||||| || || | ||| |||| Sbjct 325332 GATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGC 325370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451936608628560