Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1065 527 8e-145 seq7681 513 2e-140 seq21 316 3e-81 seq46 260 2e-64 seq581 165 1e-35 seq9200 163 4e-35 >seq1065 Length=3091 Score = 527 bits (584), Expect = 8e-145 Identities = 729/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || |||||||| || |||||| Sbjct 1428 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 1487 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | ||| || || || ||||| || ||||| ||||| ||| Sbjct 1488 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGGATATTTTTGGTGTAGAAAGTC 1547 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 1548 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 1607 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || || |||| | ||||| | |||| | ||| | || || ||||| Sbjct 1608 TTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 1667 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 |||||||||||||||| |||||| |||||| || || | ||||||||| || ||||| Sbjct 1668 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 1727 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| || ||||| ||||| || || || |||| || || | ||| || | Sbjct 1728 AAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAAGCTCGG 1787 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||| | ||||||||||| || | ||| || ||||||||||| || |||||| Sbjct 1788 AAGGTATTCGCACCATCACCATCTTCGAATAGAGTGTTTTCTACAGTAGCCCCATGAATA 1847 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | ||||| | || || || |||||||||||||| ||||| | | Sbjct 1848 GCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAAGGGGTTCAAC 1907 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||| || | ||| || ||||| ||||| || ||||| Sbjct 1908 GTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGCTACGCCAAAA 1967 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 ||| ||||||||||||| || || || || ||||| || || || || || ||||| Sbjct 1968 CTCGGTGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACGGAAACAAAA 2027 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 || || || |||||||| || | |||||||| || || | | | || ||| || || Sbjct 2028 ACCGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCTCA-ATTGAACAGACCGAGC 2086 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | |||||||||||| || ||||| || || ||||| || ||||| Sbjct 2087 AAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAA 2146 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || ||||| || || |||||||| ||||| Sbjct 2147 AGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCTGGTCCCCA 2206 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| || | | || ||| | | | | |||||| || || || || || || | ||| Sbjct 2207 TAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACCGCCGCCGTTAAGAA 2266 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| ||| | || || || ||||| || || ||||| Sbjct 2267 ATTGCAGCCTTCTAAATAGGAACTAGCCAATCCATGGGTATACCAAGAAGTTACAAAAGT 2326 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || || || | |||||| || | || | |||||| ||| || || | || || || Sbjct 2327 AGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCAGA 2386 Query 7222 CCAACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||| || ||||||||||| | || | | ||| |||||| || | | |||||| Sbjct 2387 CCATCCTACAAAAACGAAACGGTCTCTTCGTAA-CCAGTCGTCCATAATATCAAA 2440 >seq7681 Length=829 Score = 513 bits (568), Expect = 2e-140 Identities = 481/612 (79%), Gaps = 0/612 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| | ||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||||| || || | || |||||||| | ||||| | Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 494 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| |||||||| || |||||||||||||| || |||| ||| | |||||| Sbjct 493 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 434 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 ||||||||| || || || ||||| || || | ||||||||| | ||||| |||||||| Sbjct 433 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 374 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||| ||||||||||| | |||||||| || ||||||||||| || ||||| || Sbjct 373 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 314 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 |||||||| |||||||| || || ||||| | || || ||| ||||||||||| Sbjct 313 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 254 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||||||||| | ||||||||||| |||||||| || ||||| || || Sbjct 253 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 194 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| || || | |||||| || || ||||| ||||||||||||||||| ||||| Sbjct 193 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 134 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 |||| ||| ||||||| ||||||||||| || | ||||||| | ||||||||| || Sbjct 133 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCC 74 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 |||||| | ||| || | | ||| ||||||| || || ||||| ||||| || ||||| Sbjct 73 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 14 Query 8134 TACACAGATCCA 8145 ||| ||||| Sbjct 13 AACAGCAATCCA 2 >seq21 Length=3603864 Score = 316 bits (350), Expect = 3e-81 Identities = 462/648 (71%), Gaps = 4/648 (1%) Strand=Plus/Minus Query 7874 GACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCA 7933 || |||| |||||||| || | | || | ||||||||| | |||| |||||| ||| Sbjct 2754045 GATTCAGTTTCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 2753986 Query 7934 CTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGG 7993 ||||| || ||||| || || |||||||| || || | ||||| || || ||| | ||| Sbjct 2753985 CTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 2753927 Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGC 8053 |||||||||| ||| ||||| |||| ||| ||||||| ||||||||||| || | || | Sbjct 2753926 ATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 2753867 Query 8054 ATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCA 8113 ||| | | ||| ||| |||||||| ||| |||| | ||| | ||| | || || Sbjct 2753866 ATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCT 2753807 Query 8114 GCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGT 8173 ||||| |||| || || || ||| ||||| ||||||||||| | || || |||| Sbjct 2753806 GCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAAGT 2753747 Query 8174 TCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGG 8233 ||||| ||||||||||| || | | ||| | | |||||| | | || || | Sbjct 2753746 TCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 2753687 Query 8234 AAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAG 8293 |||||||||| ||||| | ||| ||||||| | | || ||||| || | || || || Sbjct 2753686 CAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAA 2753627 Query 8294 TGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATAC 8353 || | | || || |||| |||||| || ||||||||||| || ||||| ||||| Sbjct 2753626 TGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAA 2753567 Query 8354 ATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACG 8413 || | |||||| || || ||||| || || ||||| || || |||||||| |||| | Sbjct 2753566 ATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATG 2753507 Query 8414 AAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAA 8472 || |||| || || || | || |||| | | ||||| ||||||| ||||| || Sbjct 2753506 AAGGCGATAATAAATACGGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAA 2753448 Query 8473 CCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||| | | || |||| ||| ||||| |||| | |||| ||||| Sbjct 2753447 CCATCGCATGTAAAGAC-ATTTTTGGTTCTAGTTATCAAGTTGCAGAA 2753401 >seq46 Length=2187656 Score = 260 bits (288), Expect = 2e-64 Identities = 345/475 (73%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 7947 CACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTG 8006 ||||| |||||||| || || | |||||| || || ||||| ||||||||||||||| Sbjct 1370353 CACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTA 1370412 Query 8007 CTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGA 8066 | | ||| |||| ||| ||||||| ||||||||||| || | || |||| | ||||||| Sbjct 1370413 CCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGA 1370472 Query 8067 AAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAG 8126 || |||||||||| || || | | ||| ||||||| || || ||||| ||||| | Sbjct 1370473 AACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 1370532 Query 8127 AGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGAC 8186 | ||||| ||| ||||| ||| ||||||| |||| | || ||||||||||||||||| Sbjct 1370533 AATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGAC 1370592 Query 8187 CCATGTATGCATAGATAC-CGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCG 8245 |||| || || || ||| | | | ||| || | | || || | |||||||||| Sbjct 1370593 CCATATA-ACA-AGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCA 1370650 Query 8246 TTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATA 8305 ||||| | ||| ||||||||||| || |||||||| || || || || || | || || Sbjct 1370651 TTGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATC 1370710 Query 8306 GCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCA 8365 || | ||| |||| || |||||||||| || ||||| ||||| | | |||||| Sbjct 1370711 GCCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCA 1370770 Query 8366 GCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGA 8420 | || | || || || ||||| || | ||| | || || | ||| |||| Sbjct 1370771 AAAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGA 1370825 >seq581 Length=5673 Score = 165 bits (182), Expect = 1e-35 Identities = 255/361 (71%), Gaps = 15/361 (4%) Strand=Plus/Minus Query 8170 AAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAG 8229 ||||||||||||||||||||| || | | ||| | | |||||| | | || || Sbjct 5668 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 5609 Query 8230 TTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATA 8289 | ||||||| || ||||| | ||||||||||| ||| || ||||||||| | || Sbjct 5608 CTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTA 5553 Query 8290 GAAGTGGAGACCAATAGCGTTAGAAGAAGG----AACAACAGCACCAGAGATGATGT--- 8342 ||||| | || || || ||||| ||| || || ||||||||||| || | Sbjct 5552 AAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAAT 5493 Query 8343 --TGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGG 8400 |||| ||||| | | ||||||| || || ||||| || || ||||| || || || Sbjct 5492 ATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGG 5433 Query 8401 AGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCA 8459 ||| ||||||| |||||||| || || ||| | || || | | | ||||| |||| Sbjct 5432 AGGGGCAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCA 5374 Query 8460 TCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGA 8519 ||| ||||||||||| |||| || ||||| || | |||| |||| |||||| |||| Sbjct 5373 TCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGA 5314 Query 8520 A 8520 | Sbjct 5313 A 5313 >seq9200 Length=658 Score = 163 bits (180), Expect = 4e-35 Identities = 210/287 (73%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 |||||||||| ||||| | ||| ||||||| ||| || |||||||| || || || || | Sbjct 638 AAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAAT 579 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354 | | || || || ||||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 578 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 519 Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGA 8414 | ||||||| || || ||||| || || ||||| || || ||||| || |||| || Sbjct 518 GTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCGATGA 459 Query 8415 AAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAAC 8473 | |||| || || || | || || | | | ||||| ||||||| ||||| ||| Sbjct 458 AGGCGATAATAAATACGGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 400 Query 8474 CAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || |||| || |||||||| | |||| |||| |||||| ||||| Sbjct 399 CATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAA 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622033145463840