Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq131 134 2e-26 seq93 132 6e-26 seq143 116 5e-21 seq49 102 1e-16 seq68 100 3e-16 >seq131 Length=616296 Score = 134 bits (148), Expect = 2e-26 Identities = 308/456 (68%), Gaps = 16/456 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 272439 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCAT 272498 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| ||| || | || || Sbjct 272499 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTGTGCCCCAAAGCCATT--AGC 272553 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || || || | |||| |||| | ||||| ||| | | |||||| |||| ||| Sbjct 272554 AGGCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGT 272613 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || |||||||| ||| |||| | ||| ||||| || || || ||||| Sbjct 272614 GCGCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATC 272673 Query 127466 GCGTGAATAGTGTCCACC-CCAGGTCTATTGCGTA--AAGTCTTGAAGAGTTCCACAGCA 127522 || | | | | | |||| | | ||| | | ||| | ||| | || || Sbjct 272674 TCGCGGACGCGGGACTCGTCCAGCTTGAC-GCGGAGGAGGTCGTAGAGAAGGC-AC-GCG 272730 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| || |||||||| ||||||||||| || || |||||| || || ||| Sbjct 272731 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 272790 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || || ||||| | |||||| || || || || ||||| |||||||| || ||| Sbjct 272791 ATGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGCCC 272850 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || || |||||||| | ||||||||||| ||| Sbjct 272851 TCGACGCAGGCGAACGCGACAAGACGCTCGGCGAAG 272886 >seq93 Length=1192474 Score = 132 bits (146), Expect = 6e-26 Identities = 313/460 (68%), Gaps = 26/460 (6%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||| ||||||||||||||||| ||||| || | |||| |||| |||||| Sbjct 324928 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATC 324987 Query 127292 AAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 127346 | || || ||||| | ||| | || || ||| ||| | | |||| | Sbjct 324988 CAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTGTGGCCC--AGCGCCATGAGCA 325042 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 | || || | |||| |||| ||||||| | ||| | | |||||| |||| || Sbjct 325043 GGCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCG 325102 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 || ||||||||||| ||| |||| | ||| || || || || || || || Sbjct 325103 CGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCT 325162 Query 127467 CGTGAATAGTGTCCACCCCAGGTCTA--TTG---CGTA-AAG-TCTT-GAAGAGTTCCAC 127518 || | | | | | || | ||| | ||| || | ||| || | || ||| ||| Sbjct 325163 CGCGGAC-GCG-CGACTC---GTCGAGCTTGACGCGGAGAAGATCATAGAGGAGG--CAC 325215 Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 ||||| || ||| ||||||||||| ||||||||||| || || ||||| || || Sbjct 325216 -GCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCC 325274 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || || ||||| | |||||| || || || || || || || |||||||| Sbjct 325275 CGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGAT 325334 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || || |||||||| | || |||||||| ||| Sbjct 325335 GCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 325374 >seq143 Length=511882 Score = 116 bits (128), Expect = 5e-21 Identities = 360/553 (65%), Gaps = 8/553 (1%) Strand=Plus/Minus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| ||||||| ||| || | |||||| || | |||||| || Sbjct 287894 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTAGCGAGGTCGGCGCCGCT 287835 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | ||| || | || | | | || ||| ||| ||| |||||||| Sbjct 287834 GAACCCGGGCGTGCGCATGGCCACCACATTGAGGGACACGTCGGGGTCCAGCTTCTTGT- 287776 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | |||| ||| || |||||||| || || ||| ||| Sbjct 287775 TGGAGCAGTGCACCTTGAGGATCTCCTCACGGCCGCGCACGTCAGGGAGCCCGACGCTGA 287716 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| |||| ||||| || ||||| | Sbjct 287715 CCTGCCGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCCGGCCGGTTAG 287656 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || || || || | | ||| | ||| |||| || |||||||| |||| || | Sbjct 287655 TGGCGGCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCCGTCAGCAGCT 287596 Query 12817 GATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCT 12873 | |||| || || || || ||||||||| | | ||| || | | ||| ||| Sbjct 287595 GGTTGAGTGTCTGCTCCCGCTCATCATTCCC---CCCACCGATGCCGGTGCCGCGCTGCC 287539 Query 12874 TACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTT 12933 | ||||||||||| || ||||| ||||| |||| ||||| || | ||| | Sbjct 287538 TGCCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTGGCCTTGGCCTTGT 287479 Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993 || | || ||||| | | || || || || || |||||||| | || | | Sbjct 287478 TGAACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCGACC 287419 Query 12994 CGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 |||| || |||||| || | |||||||||||||| || || || |||| Sbjct 287418 CGGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCTTCGCCAGAAGCGTCT 287359 Query 13054 TCCCCGTCCCTGG 13066 |||||||||| || Sbjct 287358 TCCCCGTCCCCGG 287346 >seq49 Length=2122476 Score = 102 bits (112), Expect = 1e-16 Identities = 355/546 (65%), Gaps = 6/546 (1%) Strand=Plus/Plus Query 12524 GCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCC 12583 |||| | ||| | ||||| ||| || | ||| || || | |||||| || ||| || Sbjct 1962238 GCGGCCGGCGAGAATGGCGGCCTCGTTCATGAGATTGGCGAGGTCGGCGCCGCTGAACCC 1962297 Query 12584 CGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC 12643 | ||| || | || | ||| || ||| ||| ||| |||||||| ||| || Sbjct 1962298 GGGCGTGCGCATGGCCACCACGTTGAGGGACACGTCGGGGTCCAGCTTCTTGT-TCGAGC 1962356 Query 12644 -GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTAC 12702 ||| || | |||| |||||| |||||||| || || ||| ||| || | Sbjct 1962357 AGTGCACCTTGAGGATCTCCTCGCGGCCGCGCACGTCAGGAAGCCCGACGCTGACCTGCC 1962416 Query 12703 GATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCG 12762 | || ||||| || |||||||| || || |||| ||||| || |||||| || || | Sbjct 1962417 GGTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCGG 1962476 Query 12763 CGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | | || | | ||| | || |||| || |||||||| |||| || || |||| Sbjct 1962477 CAAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTGA 1962536 Query 12823 TGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGACG 12881 || || || || || || || | | || | |||| | ||| ||| | |||||| Sbjct 1962537 GCGTCTGCTCCCGCTCGTCGTTACCCCCGCCGATG-CCCGTGCCGCGCTGCCTCCCGACG 1962595 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 ||||| || ||||| |||||||| | ||||| || || ||| | || | Sbjct 1962596 GCGTCGATCTCGTCGATGAAAACAAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAGG 1962655 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACAT 13001 || ||||| | | || || || || || |||||||| | || | || ||| ||| Sbjct 1962656 TCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCGG-ACAG 1962714 Query 13002 TG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060 | || ||| || || | || ||||||||||| || || || |||||||| || Sbjct 1962715 CGAGAAGAACGGCACCCCTGCCTCCCCCGCGATGGCCTTCGCCAGAAGCGTCTTCCCGGT 1962774 Query 13061 CCCTGG 13066 ||| || Sbjct 1962775 CCCCGG 1962780 >seq68 Length=1664768 Score = 100 bits (110), Expect = 3e-16 Identities = 198/288 (69%), Gaps = 14/288 (5%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 |||||||| || || | || || || || | |||||| ||||| || || || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 || |||| || || || | || || ||||||||||||||||| |||||||||| | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTGAGG 281408 Query 12825 GTTTGTTCACGTTCATCATT--CGCGGGC-ATACCA--CCCGCACTGCGTTGCTTACCGA 12879 || || || | ||||||||| | | | |||||| || | |||| || || | Sbjct 281409 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTT-----CCAA 281463 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAA 12937 | || |||||||| |||| || || || || || ||| || ||| |||| ||| Sbjct 281464 CCGCATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGC--CTTCTTAAA 281521 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | ||| || || | |||||| ||||| ||||||||||||||||| Sbjct 281522 CAGATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAA 281569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613416815051760