Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq93 176 7e-39 seq131 141 1e-28 >seq93 Length=1192474 Score = 176 bits (194), Expect = 7e-39 Identities = 530/806 (66%), Gaps = 28/806 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| | ||| || ||||| | |||| ||||| Sbjct 324942 CTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCATCCAGTCGAACGGGTT 325001 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || || ||| |||| | ||| || || || || Sbjct 325002 GGCGACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 325061 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| || ||| || | | ||| || || | ||| ||||||||| || | Sbjct 325062 GATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCAGGGGAGCGCGTCGCA 325121 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 325122 GACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCTCGCG-GACGCGCGACTCGT 325180 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| | | | || | | |||||||||||||||||||||||||| | Sbjct 325181 ---CGAGCTTGACGCGGAGAAGATCAT---AGAGGAGGCACGCAAAGTCGCAGTGCAGAC 325234 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | ||||||||||||||| || || | Sbjct 325235 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCGCGTTTCT 325294 Query 160005 TGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| |||| || ||| ||||| ||||| ||| || ||| Sbjct 325295 TGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAGGCGAAC 325353 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || ||||||| ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 325354 GCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGCCCACTC 325409 Query 160123 AGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | | ||| | |||| |||| | ||||| || Sbjct 325410 GGCC----TTGCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGAACAGGCGGTCCTTCT 325465 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 325466 CGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 325525 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 ||||||| ||||| ||| ||| || |||||| ||| || || ||| Sbjct 325526 CGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCACCTGGACGTCGGACATGA 325585 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || || || | ||||||| ||| || ||||| || | |||| Sbjct 325586 ACC-GCGACGCCAGGTTCTCAAGCACTATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACG 325644 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || |||||||| || | |||||| ||||| | |||||||| | |||| | Sbjct 325645 TGGGAGATGAAGTGGCGCTCGTCGGGATTGAGCGCGGTGTCCCAGTGGCGCGCGTCGGCG 325704 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCA 160443 | | || ||||| || ||| |||| Sbjct 325705 GAGAGGTCCACCTCATCGGCGGTCCA 325730 >seq131 Length=616296 Score = 141 bits (156), Expect = 1e-28 Identities = 491/752 (65%), Gaps = 28/752 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || ||| || ||||| | |||| ||||| Sbjct 272454 CTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 272513 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| || | |||| |||| | ||| || || || || Sbjct 272514 GGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCGGTCGGCGACGAACTC 272573 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 || ||| | ||| || | | ||| || || | || ||| ||||| || | Sbjct 272574 GACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCAGGGAAGCGCGTCGCA 272633 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT---TCGT 159884 | ||||| ||| || ||||| || |||| || |||| ||| ||| || |||| Sbjct 272634 GACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCGT 272692 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 || ||||| | | | |||| | | || |||||||| |||||||||||||| | Sbjct 272693 ---CCAGCTTGACGCGGAGGAGGTCGT---AGAGAAGGCACGCGAAGTCGCAGTGCAGGC 272746 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| || | Sbjct 272747 CCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCGCGTTTCT 272806 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| || | | | | || || || ||||| ||| || ||| Sbjct 272807 TGAGCCAGAAGATGG-CGCAGAACGAGCCCGAGAAGAAAATGCCCTCGACGCAGGCGAAC 272865 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || || || | ||| | || ||| | | | | | | |||| | ||| ||| || Sbjct 272866 GCGACAAGACGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCAGCGCATGGTCCACTC 272921 Query 160123 AGCCTTCTTTGCGATGCACGGCATG---CG-CTCGACGGCGTTAAACAATCTGTCCTGCT 160178 ||| ||||| ||||||| | || ||| | |||| || | | ||||| || Sbjct 272922 GGCC----TTGCGGCGCACGGCGGGGACCGTCTCTATGGCGCGGAAGAGCCGGTCCTTCT 272977 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 || | || ||| || | | |||| ||||||||| || | ||| | || | Sbjct 272978 CCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCT 273037 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGA 160298 | ||||| ||||| ||| |||||| |||||| ||| || || ||| Sbjct 273038 CAATGGCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGCGACCTGGACGTCGGACATGA 273097 Query 160299 ACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||| ||| |||| || | || | ||||||| || || ||||| || | |||| Sbjct 273098 ACC-GCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGCGGCGAAGAAGGCGAGCACG 273156 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||||| || | |||||| |||||| Sbjct 273157 TGGGAGATGAAGTGGCGCTCGTCCGCGTTGAG 273188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795038053760160