Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq47 127 8e-24 seq53 123 1e-22 seq38 93.3 2e-13 seq18 91.5 6e-13 seq10 87.8 7e-12 seq8 87.8 7e-12 seq39 84.2 9e-11 >seq47 Length=2158321 Score = 127 bits (140), Expect = 8e-24 Identities = 205/294 (70%), Gaps = 12/294 (4%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 1955171 GTTCTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGCAAATCTGTTTCAAAGGCT 1955112 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||||| || ||||| || || |||||||| Sbjct 1955111 GTGATTACTGTTCCAGCTTATTTCAATGATGCACCGCGTCAAGCCACAAAGGATGCAGGT 1955052 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | ||||| |||| || |||||||| |||||||||||||| | Sbjct 1955051 CGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTGTCT 1954992 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 |||||| | ||| | || || || | |||| ||| |||||| |||| Sbjct 1954991 TATGGA--ATGAACAACA--------AGGAGGGATTAATA--GCAGTTTTTGATCTTGGA 1954944 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 ||||||||| ||||| ||| | || || | |||| || ||||| ||| Sbjct 1954943 GGAGGAACTTTTGATATCTCTATTCTGGAGATCTCAAATGGAGTTTTTGAGGTA 1954890 >seq53 Length=1972613 Score = 123 bits (136), Expect = 1e-22 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| ||||| || ||| || ||||| | ||| | | || Sbjct 39872 GTTCTGACGAAGATGAAGGAAACTGCTGAATCTTACCTTGGTAAATCTGTTTCGAAGGCT 39813 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| || |||||||||||||| || || || || || ||||||||||| Sbjct 39812 GTGATTACTGTTCCAGCATATTTCAATGATGCGCAGCGTCAGGCCACAAAAGATGCAGGC 39753 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | ||||||||| | |||| | |||||||||||||| || ||||||||||| | Sbjct 39752 CGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATGAACCAACGGCAGCTGCTCTGTCT 39693 Query 451445 TATGGA 451450 |||||| Sbjct 39692 TATGGA 39687 >seq38 Length=2547764 Score = 93.3 bits (102), Expect = 2e-13 Identities = 245/373 (66%), Gaps = 7/373 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| |||| ||||| || ||||||||||| | || ||| || | || ||| Sbjct 1910642 TTTGCAGCTGAGGAAATCTCCTCTATGGTTCTGATCAAGATGCGTGAGATTGCTGAAGCC 1910701 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || |||| | || | |||| || | || ||||| || || |||||||| | Sbjct 1910702 TACCTTGGCAGCACTGTCAAGAATGCTGTTGTCACAGTTCCTGCCTACTTCAATGACTCG 1910761 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || |||| || || || ||||| ||| ||||||||| | ||||| || || || || Sbjct 1910762 CAGAGGCAGGCCACCAAGGATGCTGGAGTGATTGCTGGTCTCAATGTGCTCCGTATCATC 1910821 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-----G 451472 ||||| || || || |||||| | || ||||| || | | | || | || | Sbjct 1910822 AATGAGCCAACTGCTGCTGCTATTGCCTATGGTCTCG--ACAAGAAGGCTACCAGTGTGG 1910879 Query 451473 AAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT 451532 || || ||| | | | ||||| |||| || || ||| |||| || | || Sbjct 1910880 GTGAGAAGAATGTCCTCATTTTTGACCTTGGAGGCGGTACTTTTGATGTATCCCTGCTCA 1910939 Query 451533 CAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTG 451592 | ||||| || || | ||||| || ||||| || |||||| || ||||| || |||| Sbjct 1910940 CCATTGAGGAGGGTATCTTTGAGGTCAAGGCCACTGCTGGTGACACCCATCTTGGTGGTG 1910999 Query 451593 AAGATATTGATAA 451605 | || |||| || Sbjct 1911000 AGGACTTTGACAA 1911012 >seq18 Length=3692672 Score = 91.5 bits (100), Expect = 6e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 || || ||||| || ||||||||| ||| |||| | | | | ||||| || Sbjct 1978128 ACCAAGATGAAGGAGACAGCAGAAGCTTATCTTGGCAAATCTATCTCAAAGGCAGTGGTT 1978069 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| || |||||||| ||||| || || ||||| || || |||||||| | ||| Sbjct 1978068 ACTGTTCCAGCATATTTCAACGATGCTCAGCGTCAAGCCACAAAGGATGCAGGCCGCATT 1978009 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | | ||| | || || ||||| || |||||||||||| | | |||||| Sbjct 1978008 GCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCAACAGCAGCTGCTTTGTCTTATGGA 1977949 Score = 84.2 bits (92), Expect = 9e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 391143 GATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAA 391202 ||||||||||| |||||||| |||||||| | ||| || || | || || || ||||| Sbjct 3502872 GATAAGGAAGGGATTCCTCCAGATCAACAGCATTTGATATTTGCTGGCAAGCAGCTTGAG 3502931 Query 391203 GATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGT 391258 |||||| | || |||| || || || ||| | ||||| |||| || ||||| || Sbjct 3502932 GATGGACGCACGCTGGCTGACTACAACATTCAGAAGGAGTCAACTCTCCACTTGGT 3502987 >seq10 Length=5007788 Score = 87.8 bits (96), Expect = 7e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| | ||||| |||| ||||| || |||||||||||| ||||| | |||||| | Sbjct 3219288 TTACAAAAGCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAACAA 3219347 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || | |||||| || | | |||||||| ||||| || ||||| || || | Sbjct 3219348 AAGATGCTGGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTGCTG 3219407 Query 451434 C 451434 | Sbjct 3219408 C 3219408 >seq8 Length=5380884 Score = 87.8 bits (96), Expect = 7e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 391138 TTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAAC 391197 |||| || ||||| || ||||| || || || ||| | | ||||| | || || ||| Sbjct 1717895 TTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAAT 1717836 Query 391198 TTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAG 391257 | |||||||||||||| || || |||||||| ||| | || || | ||||||||||| | Sbjct 1717835 TGGAAGATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGG 1717776 Query 391258 TATTAAGACTGAGAGG 391273 | | || || ||||| Sbjct 1717775 TCCTGAGGCTCAGAGG 1717760 >seq39 Length=2543792 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 391143 GATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAA 391202 ||||||||||| |||||||| ||||| || ||||| || || | || || || || || Sbjct 1270101 GATAAGGAAGGGATTCCTCCGGATCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTGGAG 1270042 Query 391203 GATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 |||||| | || |||| || || || ||| | ||||| | || || ||||| ||| | Sbjct 1270041 GATGGACGCACGCTGGCTGACTACAACATTCAGAAGGAGTCGACTCTACACTTGGTACTC 1269982 Query 391263 AGACTGAGAGG 391273 || || ||||| Sbjct 1269981 AGGCTCAGAGG 1269971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975420050468888