Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq53 107 1e-17 seq38 107 1e-17 seq48 105 5e-17 seq10 105 5e-17 seq128 100 2e-15 seq47 96.9 3e-14 seq18 96.9 3e-14 seq9 95.1 9e-14 seq40 91.5 1e-12 seq63 89.7 4e-12 >seq53 Length=1972613 Score = 107 bits (118), Expect = 1e-17 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||||||||| || |||| ||||||||| Sbjct 39688 CCATAAGACAGAGCAGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCA 39747 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | ||||||||||| ||||| || | || | ||| || |||||||| ||||||||| Sbjct 39748 ATGCGGCCTGCATCTTTTGTGGCCTGACGCTGCGCATCATTGAAATATGCTGGAACAGTA 39807 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || || || | | || |||||||| |||| Sbjct 39808 ATCACAGCCTTCGAAACAGATTTACCAAGGTAAG 39841 >seq38 Length=2547764 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 1910865 TTCTTGTCGAGACCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGGAGCACA 1910806 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| ||| ||||| || ||||| || || || || || || || || Sbjct 1910805 TTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGCGAGTCATTGAAGTAG 1910746 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || | ||| |||| Sbjct 1910745 GCAGGAACTGTGACAACAGCAT 1910724 >seq48 Length=2155392 Score = 105 bits (116), Expect = 5e-17 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| || || |||| |||||||| || | | | ||| || | || | Sbjct 164449 ACATCGAAGGTACCGCCTCCCAAATCAAAAACTAGGATAGT---TTCATTATTTT---TC 164396 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| || | | ||||||||||||||||| ||||| | | ||| | | Sbjct 164395 TTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTTATAATACGGAGAACCTCA 164336 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || ||||| | || |||||||| || ||| |||||| |||||||| |||||||| Sbjct 164335 AGTCCCGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGCGAATCGTTGAAATATGCT 164276 Query 518288 GGAACAGT 518295 ||||| || Sbjct 164275 GGAACTGT 164268 >seq10 Length=5007788 Score = 105 bits (116), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 518166 ||||||| ||| ||||| |||| ||||| | || | | |||| || | || | Sbjct 3219487 TACATCAAAGGTACCACCTCCCAAGTCAAACACTAGGA---TTGTTTCATTATTTT---T 3219434 Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 || |||| ||||| || || | |||||||||||||| || ||||| | | ||| | Sbjct 3219433 CTTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGAACCTC 3219374 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || || ||||| | || |||||||| || ||| |||||||||||| || |||||||| Sbjct 3219373 CAGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAATATGC 3219314 Query 518287 AGGAACAGTAATAACGGC 518304 ||||| |||| ||| || Sbjct 3219313 TGGAACTGTAACAACTGC 3219296 >seq128 Length=654355 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| |||| |||||||||||| || ||||| || || | | ||| Sbjct 502539 TTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTGGGCTCATTGATGATACGGAGGACA 502480 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| || ||||| || ||||| || || || || || || || || Sbjct 502479 TTCAGACCAGCAATCACACCCGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAGTAG 502420 Query 518285 GCAGGAACAGTAATAACGGC 518304 |||||||| || | ||| || Sbjct 502419 GCAGGAACTGTGACAACAGC 502400 >seq47 Length=2158321 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 1954987 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 1955046 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | |||||||| || |||||||| | ||| ||| || ||||| || ||||||||| Sbjct 1955047 ATCCGACCTGCATCCTTTGTGGCTTGACGCGGTGCATCATTGAAATAAGCTGGAACAGTA 1955106 Query 518297 ATAACGGC 518304 || || || Sbjct 1955107 ATCACAGC 1955114 >seq18 Length=3692672 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||| |||||||| || ||||| ||||| |||| || | ||| |||||| Sbjct 768293 CCATAGGACAGAGCTGCAGCAGTGGGCTCATTGATAATCCTCATCACCTCAAGCCCAGCA 768234 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||||| || ||||| || || || || | || | ||| || ||||| ||||| |||||| Sbjct 768233 ATTCTACCAGCATCCTTTGTAGCCTGACGCTGAGCATCATTGAAATAAGCAGGGACAGTA 768174 Query 518297 ATAACGGC 518304 ||||| || Sbjct 768173 ATAACAGC 768166 >seq9 Length=5113091 Score = 95.1 bits (104), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || ||||||||||| |||| ||||||||||| |||||||| || || | || ||| Sbjct 3116117 TTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATTATACGCATCACA 3116176 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| || || || || ||||| || || || || ||||| ||||| Sbjct 3116177 TTGAGGCCGGCAATGACACCAGCGTCCTTGGTGGCCTGCCTCTGCGAGTCGTTGAAATAG 3116236 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || | ||||| Sbjct 3116237 GCAGGCACTGTTACCACGGC 3116256 >seq40 Length=2521541 Score = 91.5 bits (100), Expect = 1e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 || || || ||||||| || || | ||||| || || |||| | || || |||| Sbjct 2081168 TCGATGCCCTCGAACAGGGAGTCGATCTCAATGGTTGTCTGAGCAGTTGACGACAGTGTG 2081109 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 || || ||||| ||||| || || | || || || | || || | ||| | | | Sbjct 2081108 CGCTTGGCACGCTCACAGGCAGTGCGCAGCCTGCGAAGAGCGCGTG--GGTTGCCACTGA 2081051 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 || | || | || | |||||| |||| ||| | | || ||||| || || | Sbjct 2081050 TGTCCTTCTTGTGCTTGCGCTTGAATTCTTGAACGAAGTGGTTCACCAGACGGTTGTCGA 2080991 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || |||||||| | | ||| | || | || || | || | ||| | || || | Sbjct 2080990 AGTCCTCACCTCCAAGGTGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATGCCCTCCT 2080931 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | ||||| || |||||||| | ||||| || || || ||| Sbjct 2080930 CAATGGTGAGCAGCGACACATCGAACGTGCCACCACCAAGGTCAAAGATGAGCACGTTCT 2080871 Query 518151 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | ||| || || ||||||||||| |||| || ||||| || || | Sbjct 2080870 TCTCACCCGCGCTGCTGGCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCCGTGGGCT 2080811 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | || || || | ||| ||||| || |||||||| || ||||| || ||||| || | Sbjct 2080810 CGTTGATGATGCGCAACACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCC 2080751 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 | || || || ||||| || || || || || | |||||| Sbjct 2080750 TCTGCGAGTCATTAAAGTAGGCCGGCACTGTCACAACGGC 2080711 >seq63 Length=1736770 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 |||||||||||||| | |||| ||| | |||||| | ||| ||| ||| | || ||| Sbjct 1024596 GAATTTTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATATAGCTGTGAAGACT 1024655 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 |||| ||||| ||||| ||| | | |||||| ||| | || || |||| || Sbjct 1024656 TCTGAGACTGGCTATATCCAACGGAGACTTGTGAAAGCTATGGAGGACATCATGGTTAAA 1024715 Query 671780 TATGATGGTACAGTAAGAAATGCA 671803 ||||||||||| ||||||||| || Sbjct 1024716 TATGATGGTACTGTAAGAAATTCA 1024739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780237539856916