Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq68 134 2e-26 seq93 131 2e-25 seq8 131 2e-25 seq131 127 3e-24 >seq68 Length=1664768 Score = 134 bits (148), Expect = 2e-26 Identities = 273/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || |||| || || |||||| | |||||||||||||||| |||||||| || || | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 281406 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 281407 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 281466 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 16123 ||||||| ||||||| || || ||||| || ||| || | | | |||| ||| || Sbjct 281467 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTC-CTTG-GCCTTCTTAAACAG 281524 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 16183 ||| || || || ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 281525 ATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATA 281583 Query 16184 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| | Sbjct 281584 TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAG 281643 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 | || || ||| | || ||| ||||| ||||| Sbjct 281644 TCCCAGGAGGACCAACAAGCAGGACACCTTTAGGAAT 281680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 211/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| || ||||| || || | ||||||||||| || || |||| ||||| || | Sbjct 1477694 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 1477753 Query 16033 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | ||||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 1477754 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 1477812 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || || || | ||| || ||||| |||| || | || || ||||| Sbjct 1477813 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 1477872 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 1477873 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 1477932 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 | | ||| |||||||| || || || || || || || || |||||||| || Sbjct 1477933 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1477992 Query 16272 CGTGGAATCTTGGCGCC 16288 ||| |||||||| || Sbjct 1477993 TTTGGGATCTTGGCTCC 1478009 >seq93 Length=1192474 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 325374 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 325315 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 325314 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 325255 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| ||||| || |||||||| || ||| || |||||| Sbjct 325254 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 325215 >seq8 Length=5380884 Score = 131 bits (144), Expect = 2e-25 Identities = 258/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 1265137 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 1265078 Query 15948 ATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 || |||| || || || ||| | ||||||||||||||||| |||||||||||||| | Sbjct 1265077 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 1265019 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 16060 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 1265018 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 1264965 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 16118 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 1264964 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 1264907 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || ||||| || ||||| || || ||||| |||||||||||||| || | | | | Sbjct 1264906 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCC 1264847 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 1264846 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 1264788 Query 16238 ACCCGTACCTGG 16249 ||| || || || Sbjct 1264787 ACCGGTCCCAGG 1264776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/327 (67%), Gaps = 22/327 (7%) Strand=Plus/Minus Query 15973 CAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 16032 |||| || |||||||| |||| ||||||||||| || || |||| || || || | Sbjct 175445 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 175388 Query 16033 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 16086 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 175387 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 175332 Query 16087 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 16142 | ||||| || ||| || || | || ||||| |||| || | || Sbjct 175331 CAATGCACGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGATGCA 175276 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || ||||| ||||| | ||| || || | | ||| | || || |||||| || Sbjct 175275 CCGACACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCG 175216 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 | || || || | ||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 175215 GCCTCCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGG 175156 Query 16263 AGGGCACCTCGT-GGAATCTTGGCGCC 16288 | |||| | | | || |||||||| || Sbjct 175155 A-GGCATCCCTTGGGGATCTTGGCTCC 175130 >seq131 Length=616296 Score = 127 bits (140), Expect = 3e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| || |||||||| || || || Sbjct 272886 CTTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTT 272827 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||||||||| || || |||||||| || ||| |||||||||||| Sbjct 272826 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 272767 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 272766 GCTCATCTCCCGCGACGAGGGCCTGCAC 272739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620650949125920