Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq143 127 2e-24 seq49 125 8e-24 seq68 120 4e-22 seq93 111 2e-19 seq8 109 6e-19 seq131 102 1e-16 >seq143 Length=511882 Score = 127 bits (140), Expect = 2e-24 Identities = 328/496 (66%), Gaps = 14/496 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 287710 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCCGGCCGGTTAGTGGCG 287651 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 ||||| || | | ||| | || |||| |||||||| || || || ||||||||| Sbjct 287650 GCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCATCTCCGTCAGCAGCTGGTTG 287591 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAA----CGCTTCTTA 11676 | ||||| || |||||||| || | ||||| ||||| |||| | | Sbjct 287590 AGTGTCTGCTCCCGCTCATCATT------CCCCCCACCGATGCCGGTGCCGCGCTGCCTG 287537 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||| ||||| |||||||| |||| ||||| |||||| |||| | | Sbjct 287536 CCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTG 287477 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || ||| ||| || || || ||||||||||| | ||| | | | Sbjct 287476 AACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCG-ACCC 287418 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || | |||||| || | |||||| |||||||| || || || ||||| Sbjct 287417 GGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCTTCGCCAGAAGCGTCTT 287358 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||||| || || | || || || |||| |||||| || || || | | Sbjct 287357 CCCCGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATTTTAGCCCCGATCGCCGT 287298 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| ||| Sbjct 287297 GAACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAACTCCTGCTTGGCCTCGTC 287238 Query 11976 GATACCCTCAACATCG 11991 || || | |||||| Sbjct 287237 GACGCCGGCGACATCG 287222 >seq49 Length=2122476 Score = 125 bits (138), Expect = 8e-24 Identities = 320/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 1962416 CGGTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCG 1962475 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||| | || | |||| |||||||| || || |||||||||||| Sbjct 1962476 GCAAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTG 1962535 Query 11623 ATCGTCTGTTCACGCTCATCGTT---GGAGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || ||||| ||||| | || || | ||||| |||| | | ||| Sbjct 1962536 AGCGTCTGCTCCCGCTCGTCGTTACCCCCGCCGATGCC-CGTGCCG--CGCTGCCTCCCG 1962592 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 1962593 ACGGCGTCGATCTCGTCGATGAAAACAAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAC 1962652 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG--CAG 11797 || || || || ||| ||| || || || ||||||||||| | ||| | ||| | | Sbjct 1962653 AGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACT---CGGACCCG 1962709 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 ||| || | ||| || || | ||| || |||||||| || || || ||||| Sbjct 1962710 GACAGCGAGAAGAACGGCACCCCTGCCTCCCCCGCGATGGCCTTCGCCAGAAGCGTCTTC 1962769 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | || || || |||| ||||||||| || || | | | Sbjct 1962770 CCGGTCCCCGGCGGGCCGATCAGCAGCACGCCCTTGGGGATCTTCGCGCCGATCGCGGTG 1962829 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | ||| ||| ||| | ||| | ||| ||||||| | |||| |||||| |||| Sbjct 1962830 AACTTCTCCGGCGACTTCAAGAACTGCACGATCTCCTGGAAATCCTGCTTGGCCTCGTCG 1962889 Query 11977 A 11977 | Sbjct 1962890 A 1962890 >seq68 Length=1664768 Score = 120 bits (132), Expect = 4e-22 Identities = 257/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || ||||||||||| ||||| |||||||| || ||||| || | ||||||||| Sbjct 1477696 AAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 1477751 Query 11653 ATACCACCT-GCCGA-----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 |||||| ||| | ||||| | | |||||||| ||||||||||| ||||| || Sbjct 1477752 --ACCACCGAGCCCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACA 1477809 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || ||||| |||| ||||| || || | || | ||| || ||| Sbjct 1477810 ATGCAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACA 1477869 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || || || | ||| ||||| | | ||| | || | |||||| || | ||| Sbjct 1477870 CCGACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCC 1477929 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCG 11886 |||| || ||| || |||||||| || || || || ||||||| || |||| ||| Sbjct 1477930 CCAGAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCAT 1477989 Query 11887 CCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACA 11946 || ||||||||||| || | ||| || || ||||||||||| || || Sbjct 1477990 CCCTTTGGGATCTTGGCTCCGAGCGCGGTGTACTTGTCTGGGTTCTTGAGGAAATCGACG 1478049 Query 11947 ATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 1478050 ACCTCCTGCAGCTCGAGCTTGGC 1478072 >seq93 Length=1192474 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||| || || |||||||| || Sbjct 325228 TGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCCG 325287 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| |||||||| || ||| ||| ||||||||||||||||| || ||| Sbjct 325288 CGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCCTCGACGCAG 325347 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 325348 GCGAACGCGACGAGCCGCTCGGCGAA 325373 >seq8 Length=5380884 Score = 109 bits (120), Expect = 6e-19 Identities = 254/381 (67%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || |||||||| || || || |||||||| || ||||| || | ||| ||||| | Sbjct 175443 AAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTC----C 175388 Query 11653 AT-ACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 | |||| || || ||||| | | || || ||||| |||||||| ||||| || || Sbjct 175387 ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGACAAT 175328 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 ||||| ||||| |||| ||||| || || | || | || || ||||| Sbjct 175327 GCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGACACC 175268 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 || || | ||| ||||| | | ||||| || | |||||| || | ||| || Sbjct 175267 GACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCC 175208 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||| || || |||||||| ||||| || ||||| | || |||| ||| || Sbjct 175207 GGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGAGGCATCC 175148 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 |||||||||||| || | ||| || || ||||||||||| || || | Sbjct 175147 CTTGGGGATCTTGGCTCCGAGCGCGGTGTACTTATCGGGATTCTTGAGGAAATCGACTAC 175088 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 ||||| || || |||||| Sbjct 175087 CTCCTGCAGCTCGAGCTTGGC 175067 >seq131 Length=616296 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 272740 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCG 272799 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| |||||||| || || || || ||||| |||||||| || ||| Sbjct 272800 CGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGCCCTCGACGCAG 272859 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| |||||||| || || Sbjct 272860 GCGAACGCGACAAGACGCTCGGCGAA 272885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588889229110800