Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq68 138 1e-27 seq8 118 1e-21 seq131 114 2e-20 seq93 111 2e-19 seq67 84.2 3e-11 seq49 84.2 3e-11 >seq68 Length=1664768 Score = 138 bits (152), Expect = 1e-27 Identities = 265/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || |||| || || |||||| | |||||||||||||||| ||||||||||| || | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 281406 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 281407 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 281466 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || || || || || ||| || ||| | | ||| |||| Sbjct 281467 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGCCTTCTTAAACAGAT 281526 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | || |||| ||| || ||||| ||||||||||||||||| | | | | | || Sbjct 281527 CACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATATA 281585 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| || Sbjct 281586 GAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAGTC 281645 Query 9552 CCTGGCTTACCCGCGAGGAGGGCACC 9577 || || ||| | || ||| |||| Sbjct 281646 CCAGGAGGACCAACAAGCAGGACACC 281671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9339 |||| || ||||| || || | || |||||||| || || |||| ||||| || | Sbjct 1477694 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 1477753 Query 9340 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | ||||||| || ||| | || || |||||||||||||||||||||||||| Sbjct 1477754 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 1477812 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || | || | || ||||| || | ||||| || || ||||| Sbjct 1477813 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 1477872 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 1477873 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 1477932 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | | ||| |||||||| || || || || || || || || |||||||| ||| Sbjct 1477933 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1477992 Query 9579 CGTGGAATCTTGGCGCC 9595 ||| |||||||| || Sbjct 1477993 TTTGGGATCTTGGCTCC 1478009 >seq8 Length=5380884 Score = 118 bits (130), Expect = 1e-21 Identities = 252/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 1265137 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 1265078 Query 9255 ATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || |||| || || || ||| | ||||||||||||||||| |||||||| ||||| | Sbjct 1265077 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 1265019 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 9367 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 1265018 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 1264965 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 || |||||||| ||||||| || || || || ||| ||| || ||| | | ||| Sbjct 1264964 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTTCTTAAA 1264905 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||||| || || | || || ||||| |||||||||||||| || | | | | | Sbjct 1264904 CAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCCG- 1264846 Query 9488 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 | || | || ||| || || || ||| || ||||| || ||| || | |||||||| Sbjct 1264845 ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTAC 1264786 Query 9547 CCGTACCTGG 9556 | || || || Sbjct 1264785 CGGTCCCAGG 1264776 Score = 104 bits (114), Expect = 3e-17 Identities = 218/323 (67%), Gaps = 14/323 (4%) Strand=Plus/Minus Query 9280 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9339 |||| || |||||||| |||| || |||||||| || || |||| || || || | Sbjct 175445 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 175388 Query 9340 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9393 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 175387 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 175332 Query 9394 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||| || || || | ||| | || ||||| || | ||||| || || | Sbjct 175331 CAATGCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGA 175272 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 |||| ||||| | ||| || || | | ||| | || || |||||| || | | Sbjct 175271 CACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCT 175212 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9573 | || || | ||| || || || ||||| ||||| || || ||| ||| |||||| || Sbjct 175211 CCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGA-GG 175153 Query 9574 CACCCCGT-GGAATCTTGGCGCC 9595 || ||| | || |||||||| || Sbjct 175152 CATCCCTTGGGGATCTTGGCTCC 175130 >seq131 Length=616296 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 272739 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 272798 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||| | ||| | || |||||||| || || |||||||| || ||||| || || Sbjct 272799 GCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGCCCTCGACGCA 272858 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | ||| |||||||||||| Sbjct 272859 GGCGAACGCGACAAGACGCTCGGCGAAG 272886 >seq93 Length=1192474 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 325216 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCC 325275 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || || ||||| | ||| | || |||||||| || || || |||||||| Sbjct 325276 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATG 325335 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||||| || || || ||||| | || |||||||||||| Sbjct 325336 CCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 325374 >seq67 Length=1688621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6951 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7010 ||||| | |||||| || || ||| |||| |||||| ||||| | | | ||||| || Sbjct 1248545 CCACAGAGCGAGGACACGCCGTTCCACCCGCGCTCGCCCTACGCCGCCGCCAAGGTCGCC 1248604 Query 7011 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7070 || || ||| | | || ||||| ||| | ||||| || || || ||| ||| | Sbjct 1248605 GCGCACTGGTACACCGTCAACTACCGAGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTG 1248664 Query 7071 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCAC 7114 ||||||||||| || |||||| | || |||| |||| ||||| Sbjct 1248665 CTCTTCAACCACGAGTCACCGCGCCGCGGTGAGAACTTCGTCAC 1248708 >seq49 Length=2122476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 107164 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 || ||| || || || |||||||||||||| || ||||||| || || | ||| | Sbjct 612497 CACCTGGGGCCTGGGAGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCG 612556 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 || |||||| | |||||| | | | |||| |||||||| ||| ||| || || | Sbjct 612557 CTGAGACATCAGATGGTATGTTTTGATGGCAGATTCAATGTCATCCTTGTGTATCCCCAC 612616 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 | || | ||| ||||||| ||| ||| |||| | | | ||| | ||| || ||| Sbjct 612617 TGAAACTCTCATTAACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGC--TTCAAG 612674 Query 107344 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | || | |||| || || |||| |||||||| || |||| |||||| Sbjct 612675 AGGTAAGACCTCTCCAGAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCC 612726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589893881078640