Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1065 381 7e-101 seq7681 363 2e-95 seq21 250 3e-61 seq46 237 2e-57 seq9200 161 1e-34 seq1856 89.7 6e-13 >seq1065 Length=3091 Score = 381 bits (422), Expect = 7e-101 Identities = 714/1047 (68%), Gaps = 39/1047 (4%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| ||||| ||||| || || ||||||||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||||||||| || Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | ||| || ||| | || || || || ||| || Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAATTTCTTA 2261 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || || || |||||||| |||| ||| | | || | |||| || | || | Sbjct 2260 ACGGCGGCGGTTTCCACCCCTG-----CTAATAGTTTAGCACACTCTTTGTTGCTACTAT 2206 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 ||||||| ||||||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 2205 GGGGACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 2146 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || | ||||| | |||| ||| |||||||||||| | | |||||||| | | Sbjct 2145 TTGTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 2086 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | | ||| | || ||||| || ||| | ||||||||| | ||||| || | Sbjct 2085 CTCGGTCTGTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTT 2026 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | | || || || |||||||| || || |||||||||| ||||| | Sbjct 2025 TTGTTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTT 1966 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 1965 TTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGT 1906 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| || ||||| |||||||| ||||| ||| || |||| | || | |||| || | Sbjct 1905 TGAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 1846 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTAT--GAAGACACATCAGTTTATACTGATAA 171181 ||||||| || || || |||| ||| | ||| ||||| | | || || || Sbjct 1845 TTCATGGGGCTAC--TGTAGAAAACACTCTATTCGAAGA------TGGTGATGGTGCGAA 1794 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 | || ||||| || ||| | || || || | ||||||||||| Sbjct 1793 T---------------ACCTTCCGAGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTC 1749 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| |||| || ||| | || ||||| || || |||||| ||||||| || || ||| | Sbjct 1748 AATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 1689 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | ||||| ||| ||||| | || || || |||| ||| | |||| |||| || Sbjct 1688 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 1629 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | || || || || || ||||| | || || || || || || || || || | || Sbjct 1628 CGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGC 1569 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 ||| ||||| || || || |||||||||||||| || ||||| ||| | || || ||||| Sbjct 1568 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTTTTAAACGAGGGTAT 1509 Query 171482 GAGAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAA 171539 | || |||||| || |||| || || || ||||| || | ||||||| || || Sbjct 1508 TCGTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAG 1451 Query 171540 GTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| | || ||||| |||||| Sbjct 1450 GTTCTACCACGTGGAAACGCTCTTTAA 1424 >seq7681 Length=829 Score = 363 bits (402), Expect = 2e-95 Identities = 448/610 (73%), Gaps = 2/610 (0%) Strand=Plus/Plus Query 169776 TTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATA 169835 |||||| ||||||||| || || || || | ||||| ||||| ||||| | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 169836 CCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAA 169895 ||| ||||||| || ||||||||||||||||| |||| ||||| ||||||||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 169896 CTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGG 169955 ||||||| | || ||||| |||||||| ||||| || |||||||| || |||||| ||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 169956 AGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTC 170015 ||||| || | ||||| || || ||||| || ||||||||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 170016 ATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACA 170075 | | ||||| ||||| || || | || || || | ||||| || || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 170076 AGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCA 170135 ||| ||||| || || ||||| || || || |||||||| |||||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 170136 GTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGT 170195 |||||| ||||||||||| | | ||||||||||| | || | || ||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 170196 ATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAA 170255 | | | ||||| || || | ||||| | || |||||||||||| | ||||||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 170256 CTTTAACCAATCAGTTGTTGAT-GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTC 170314 || |||||||| || |||||| || || || | | || |||| |||| | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCA 539 Query 170315 TAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 170374 | ||| | || || | ||||||||||| ||||| ||| | ||||| ||||||||||| | Sbjct 540 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 599 Query 170375 TAGACCTAGC 170384 ||||| |||| Sbjct 600 TAGACTTAGC 609 >seq21 Length=3603864 Score = 250 bits (276), Expect = 3e-61 Identities = 396/565 (70%), Gaps = 2/565 (0%) Strand=Plus/Plus Query 169447 TGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCA 169506 |||||||||||| | ||||| || |||| | || ||| | | || || | || Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCC 2753504 Query 169507 TTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTC 169566 ||||| ||||| ||||| || ||||| || || || | || || || |||||||| Sbjct 2753505 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTA 2753564 Query 169567 TTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTA 169626 | ||||| ||||| || ||||||||||| || |||| | || || ||| || | Sbjct 2753565 ATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTG 2753624 Query 169627 CACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCT 169686 || || |||||| | || ||||| ||| ||||||||||||||| || |||||||||||| Sbjct 2753625 CATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCT 2753684 Query 169687 TATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGG 169746 | | || | | | | |||||| | ||||| | | || ||||| | | ||| Sbjct 2753685 TGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGG 2753744 Query 169747 GAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 169806 ||||| | | || || |||||||||||||| |||||| || || | || || Sbjct 2753745 GAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTT 2753804 Query 169807 TCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGT 169866 | ||||| ||| | ||||| | ||||| |||||| || || ||| ||||| Sbjct 2753805 GCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGT 2753864 Query 169867 ATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAAC 169926 ||| | |||| ||||| |||||||||||||||||| | || ||||| ||| |||| ||| Sbjct 2753865 ATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAAC 2753924 Query 169927 ATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTC 169986 || || | |||||| || ||||| ||| ||||| || | ||||| || || ||||| Sbjct 2753925 ATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTC 2753983 Query 169987 TCAGCAATGCATGGTTCACTTGTTA 170011 || |||||| |||| |||| || Sbjct 2753984 AGTGCTATGCATAGTTC-CTTGGTA 2754007 >seq46 Length=2187656 Score = 237 bits (262), Expect = 2e-57 Identities = 330/461 (72%), Gaps = 1/461 (0%) Strand=Plus/Minus Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || ||||||||||| | ||| | ||||| || || || | | || | |||||| Sbjct 1370823 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 1370764 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 || | ||||| ||||| || |||||||||| || ||||| | | || |||||| Sbjct 1370763 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 1370704 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | || || |||||||| |||||||| ||| || ||||||||||||| || ||||||||| Sbjct 1370703 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 1370644 Query 169684 CCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAG 169743 |||||| || | | | | || ||| ||| | || | | || ||||| | || Sbjct 1370643 CCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATGGGTCGTGAG 1370585 Query 169744 TGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 169803 |||||||| | | | | || |||| ||||||||| ||||||||| || || || Sbjct 1370584 TGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCT 1370525 Query 169804 GTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGAT 169863 || | ||||| ||||| ||||| | ||| | | ||||| || ||||||||| Sbjct 1370524 GTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGAT 1370465 Query 169864 GGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCAT 169923 |||||| | |||| ||||| |||||||||||||||||| | || ||| | | |||||| Sbjct 1370464 GGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCAC 1370405 Query 169924 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964 ||||| || |||||||| || |||||| ||| ||||| || Sbjct 1370404 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 1370364 >seq9200 Length=658 Score = 161 bits (178), Expect = 1e-34 Identities = 185/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 || |||||||||||| | ||||| || |||| | || ||| | | || || | Sbjct 395 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATC 454 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || ||||| ||||| ||||| || ||||| || || || | || || || | |||||| Sbjct 455 GCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 514 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 || | ||||| ||||| || ||||||||||| || |||| | || || |||||| Sbjct 515 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 574 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | || || |||||||| |||||||| ||| |||||||||||||||| || ||||||||| Sbjct 575 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGT 634 Query 169684 CCTTATCAG 169692 |||||| || Sbjct 635 CCTTATGAG 643 >seq1856 Length=2117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || ||||||||||| || Sbjct 1189 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 1130 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGG----TGGTTGGTTCTTAGGGACTAC 170644 || || || | |||||||| || | | | || ||||||||| ||||||||| Sbjct 1129 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 1070 Query 170645 CTTCGTTACATCATGGTATACACATGG 170671 || || || || |||||||| ||||| Sbjct 1069 TTTTGTAACTTCTTGGTATACCCATGG 1043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579127467474240