Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq7681 417 9e-112 seq21 264 1e-65 seq46 219 5e-52 seq9200 152 6e-32 seq581 132 5e-26 >seq7681 Length=829 Score = 417 bits (462), Expect = 9e-112 Identities = 458/609 (75%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 168865 TTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATA 168924 |||||| |||||| |||||||| || || | || || ||| || ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 168925 CCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAA 168984 ||| ||||||| || ||||||||||||||||||| ||||||| ||||| || ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 168985 CTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGG 169044 ||| ||| | |||||||| |||||||||||||| ||||||||||| || || ||| ||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 169045 AGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATC 169104 ||||| ||| | ||||| || || |||||| || ||||||||||| | ||||| || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 169105 TTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCA 169164 | | | ||||| || || ||||| | |||||| || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 169165 AGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCA 169224 ||| ||||| || ||||| ||||| || || || || || || ||| ||||||||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 169225 GTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGT 169284 ||||| |||||||||||||| | | | ||||||||| | || | | || || || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 169285 ATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAA 169344 | | | ||||| || || | ||||| |||| |||||||||||| | || || || || Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 169345 CTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACT 169404 || |||||||| || || ||| | ||| | ||| ||| |||| ||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 169405 TAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACT 169464 ||| | || || |||||||||||||||||||| || ||||| |||||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 169465 AGACTTAGC 169473 ||||||||| Sbjct 601 AGACTTAGC 609 >seq21 Length=3603864 Score = 264 bits (292), Expect = 1e-65 Identities = 451/644 (70%), Gaps = 14/644 (2%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | | | |||| || || || || | ||||| | | ||||| ||||| || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | || ||| | || || || || || || Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCTCCT 2753519 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | || ||||| ||| || |||| ||||||||||| Sbjct 2753520 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAAT 2753579 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || ||||| ||||| || |||| | ||| || ||| | | || || |||||| || Sbjct 2753580 ATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTT 2753639 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 || ||||| || | ||||| |||||||| ||||||||||||| || | | | Sbjct 2753640 TGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTT 2753699 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTA--TCATAC 168847 | |||||| || | || | || || |||||| | | |||||| ||| | || Sbjct 2753700 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT-- 2753757 Query 168848 AGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTT 168907 | | |||||| | |||||||| |||||| |||||| | || || |||||| | Sbjct 2753758 -GTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGT---TGCAGCTGCT 2753813 Query 168908 GCAG-TA-TTCCTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTA 168964 ||| || || |||| | ||||| |||||| || ||| ||| |||||||| || || Sbjct 2753814 ACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTA 2753873 Query 168965 GGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATG 169024 ||||| ||||| || |||||||| ||| | |||||||| ||| |||||||||| |||| | Sbjct 2753874 GGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACG 2753933 Query 169025 CATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATG 169084 ||||| || || || ||| ||||| ||| | ||||| || || |||||| || ||| Sbjct 2753934 CATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATG 2753992 Query 169085 CATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGA 169128 ||| |||| | ||||| ||| | | ||||| ||||| ||||| Sbjct 2753993 CATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 219 bits (242), Expect = 5e-52 Identities = 334/472 (71%), Gaps = 3/472 (1%) Strand=Plus/Minus Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || ||| | || || ||||| || | || | ||||| || || || | | ||| | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 ||| || || | ||||||||||| || ||||| |||| || ||||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATAT 168763 || ||||| | || || ||||||||||||||||| || | | ||||| |||||||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCG-GAATCTCTGCCTACAT 168822 |||||||||||||| || | | | | || ||| || | | | | || || || || Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATAT 1370595 Query 168823 GGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTA 168882 |||| | |||||||| | | | | || |||||| |||||||| |||||| || Sbjct 1370594 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 1370535 Query 168883 TTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTC 168942 |||||| || || | || || ||| || ||| | | ||| | | ||||| || Sbjct 1370534 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 1370475 Query 168943 TTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCA 169002 |||||||||||||||| || ||||||| ||||| || |||||||| ||| | |||||| | Sbjct 1370474 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 1370415 Query 169003 AGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGT 169054 | |||||||||||| ||||||||||| || || ||| ||| ||||| ||| Sbjct 1370414 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 1370363 >seq9200 Length=658 Score = 152 bits (168), Expect = 6e-32 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | || | ||||| | || ||||| ||||| || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | || ||| | || || || || || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCT 472 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | || ||||| | ||| || || | ||||||||||| Sbjct 473 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 532 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || ||||| ||||| || |||| |||| || ||||| | || || ||||||||| Sbjct 533 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATT 592 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 |||||||| || | | ||||| |||||||| |||||||||||||| Sbjct 593 TGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTA 639 >seq581 Length=5673 Score = 132 bits (146), Expect = 5e-26 Identities = 246/358 (69%), Gaps = 15/358 (4%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| | || ||||||||||| || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACA- 168668 || || ||||| || || || | || ||||| | ||| || || | |||||||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 168669 ----ACATCATCTCAGGTGCAGTTGTT----CCATCTTCAAACGCAATCGGTCTACACTT 168720 | || ||||| ||||| || || || |||| || ||||| | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 168721 CTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCA 168780 ||||| |||||||| || | | |||||||||||||| ||||| |||||||| | Sbjct 5552 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 168781 GTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 168838 | | | | | |||||| || | || | || || |||||| | |||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 5665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564358443641280