Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq7681 405 8e-108 seq21 262 6e-65 seq46 228 1e-54 seq9200 165 1e-35 seq581 127 3e-24 >seq7681 Length=829 Score = 405 bits (448), Expect = 8e-108 Identities = 461/619 (74%), Gaps = 0/619 (0%) Strand=Plus/Plus Query 215668 TTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTA 215727 |||||| |||||| || || || ||||| | ||||| ||| || ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 215728 TCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAA 215787 || | ||||| || ||||||||||| |||||| | ||||||||||| || ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 215788 CTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGG 215847 || ||| |||| |||||||| ||||||||||| || ||||| ||||| ||||||||||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 215848 TGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATC 215907 ||| |||||||| ||||| ||||| | ||| ||| ||||| ||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 215908 TTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACA 215967 | | | ||||| || || ||||| | |||||| || | |||||||| || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 215968 AGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCA 216027 |||||| || || || ||||| || ||||| |||||||| |||||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 216028 ATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTAT 216087 ||| || |||||||||||| | | | ||||||||| | || || | ||||| | Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 216088 TTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAA 216147 | |||||| ||||| | ||| | |||||||| |||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 216148 CTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCT 216207 |||||||| ||||| || || ||| |||||| ||||||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 216208 TAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATT 216267 ||| | || ||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 216268 AGACTTGGCTGCTGCTGAA 216286 |||||| |||||| |||| Sbjct 601 AGACTTAGCTGCTCTTGAA 619 >seq21 Length=3603864 Score = 262 bits (290), Expect = 6e-65 Identities = 424/599 (71%), Gaps = 13/599 (2%) Strand=Plus/Plus Query 215339 TGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTT--GT-TTCATCGTA 215395 ||||||||||| | ||||| ||| ||| | | || | |||| || || || | Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTA-CCTTATTGA--CTGCAACTTCCGTATTTATTATC 2753501 Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || ||||| || ||||| || || || | ||||| ||| ||||||| Sbjct 2753502 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCT 2753561 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||||| ||||| ||||| || ||||||||||| || | ||| ||| || ||| || Sbjct 2753562 TTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGA 2753621 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || || || ||||| | || ||||| ||| ||||| |||||| | ||||||||||| Sbjct 2753622 TTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGT 2753681 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAG 215635 |||| | || || | | |||||| | ||||| | || || || | | Sbjct 2753682 CCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAA 2753741 Query 215636 TGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT 215695 ||||||||| || | || |||||| | |||||||| |||||| || || | ||| Sbjct 2753742 TGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCT 2753801 Query 215696 GTATCTGCTGCCTTTGCAG-TA-TTCCTTG-TGTATCCATTCGGTCAGGGTTCTTTCTCT 215752 || | ||||| | ||| || || |||| | || || ||||| || ||| ||| Sbjct 2753802 GTTGCAGCTGC---TACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCT 2753858 Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812 ||| |||| | | ||||||||||| || ||||||| ||| |||| |||||||| || Sbjct 2753859 AATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAG 2753918 Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCA 215872 |||||||| || | ||| ||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 2753919 CACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC- 2753977 Query 215873 TTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGA 215931 | ||| ||| ||||| |||| | || || ||| | | ||||| ||||| ||||| Sbjct 2753978 CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 228 bits (252), Expect = 1e-54 Identities = 332/465 (71%), Gaps = 3/465 (1%) Strand=Plus/Minus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || ||||| || || | ||| | ||||| || || || | |||| || ||||||| Sbjct 1370823 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 1370764 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || |||||||||| || | || | || || |||||| Sbjct 1370763 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 1370704 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || || || ||||| || |||||||| ||| | |||| |||||| | ||||||||||| Sbjct 1370703 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 1370644 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTG-GTATTTCTGCATACTGCGGAAGACA 215634 |||| | || || | | || ||| | ||| ||| | ||| || || | | Sbjct 1370643 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGTTATA-TG-GGTCGTGA 1370586 Query 215635 GTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACC 215694 |||||||||| || | | | |||||| |||||||| |||||| || || || || Sbjct 1370585 GTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCC 1370526 Query 215695 TGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGA 215754 ||| | ||||| ||| || ||| | | || | ||||||| || ||||||||| Sbjct 1370525 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGA 1370466 Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814 || |||| | | ||||||||||| || ||||||| ||| |||| ||| ||| ||||| Sbjct 1370465 TGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCA 1370406 Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGT 215859 |||||| || ||||| ||||| |||||||||||||| |||||||| Sbjct 1370405 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq9200 Length=658 Score = 165 bits (182), Expect = 1e-35 Identities = 198/268 (74%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 || || |||||| | ||| | || ||||||||||| | ||||| ||| | | | | Sbjct 374 ACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 433 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || | | | |||| | |||||||| || ||||| || ||||| || || Sbjct 434 GCAACTTCCGTATTTATTATCG---CCTTCATCGCAGCCCCTCCAGTAGATATTGATGGT 490 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | ||||| ||| ||||||||||| | ||||| ||||| || ||||||||||| || Sbjct 491 ATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATT 550 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || |||||||| || || ||||| || |||||||| ||| | ||| Sbjct 551 ATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTT 610 Query 215552 GACGAATGGCTCTACAATGGTGGACCTT 215579 || |||||| | ||||||||||| |||| Sbjct 611 GATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 127 bits (140), Expect = 3e-24 Identities = 193/274 (70%), Gaps = 13/274 (5%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 5334 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 5393 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 5394 GCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 5453 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACA-----ACATCATCTCTGGTGCTG 215489 | ||||| ||| ||||||||||| | ||||| |||| | || ||||||||||| Sbjct 5454 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCA 5513 Query 215490 TT----GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCA 215545 || |||||| ||| || |||||||| ||||| |||| ||||||||| ||| Sbjct 5514 TTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGCA 5569 Query 215546 ACAGTTGACGAATGGCTCTACAATGGTGGACCTT 215579 | ||||| || ||| | |||||||| || |||| Sbjct 5570 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTT 5603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744971830853280