Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1065 598 5e-166 seq7681 464 8e-126 seq21 282 5e-71 seq46 244 1e-59 seq9200 154 2e-32 seq581 140 4e-28 >seq1065 Length=3091 Score = 598 bits (662), Expect = 5e-166 Identities = 740/1009 (73%), Gaps = 4/1009 (0%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || || || ||||| || |||||||| || | || || Sbjct 2428 GACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 2369 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 2368 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2309 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTG 183370 |||||||||||| | ||| ||||||| | ||||| ||| | ||||||| |||| || | Sbjct 2308 TATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAA--TTTCTTAACGGCGGCGG 2251 Query 183371 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTC 183430 | || || |||||| | | | | || ||| | || |||| ||||| || || | | Sbjct 2250 TTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGCAC 2191 Query 183431 AAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 ||||||| ||| || ||||| ||| | || || || |||| |||||| || ||||| | Sbjct 2190 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATG 2131 Query 183491 GTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA 183550 | || ||||| || || ||||||||| | || || |||||||||||||| | || Sbjct 2130 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 2071 Query 183551 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCC 183610 | | ||||| ||||| ||| | ||||||||||| || || |||||||| ||||||| Sbjct 2070 TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTATTCC 2011 Query 183611 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 183670 |||| ||||||||||| || ||| |||||||||||||| ||||| || |||||||| | Sbjct 2010 TTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCTA 1951 Query 183671 TCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATA 183730 | ||| ||||| | | ||| | || || || || || |||||||| |||||||| |||| Sbjct 1950 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCATA 1891 Query 183731 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAG 183790 ||||||||||||| || || |||| | || || || | ||||| ||||| | || | Sbjct 1890 TGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTACTG 1831 Query 183791 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCA 183850 |||| || || | | |||||||| || || || || ||| || ||| | | | Sbjct 1830 TAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACCCAA 1771 Query 183851 CTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCG 183910 |||||| ||||| || ||||| |||||||| || || || || ||||| |||||||| | Sbjct 1770 CTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTG 1711 Query 183911 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183970 | ||||| ||| |||||| |||||||| || ||||||||| | ||||| || |||| | Sbjct 1710 GTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCG 1651 Query 183971 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATT 184030 || | ||| | | |||||||| | |||| || ||||| || || ||||| ||||| | Sbjct 1650 GTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACT 1591 Query 184031 TTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGA 184090 | || || || ||| | ||||| |||||||| ||||||||||| |||||||| || | Sbjct 1590 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 1531 Query 184091 ACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGA 184150 | || ||| | || || || | ||||| ||| | ||| || ||||| || ||||| | Sbjct 1530 ATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAA 1471 Query 184151 ATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 1470 ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 1422 >seq7681 Length=829 Score = 464 bits (514), Expect = 8e-126 Identities = 470/612 (77%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 182169 TGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTAT 182228 ||||| ||| ||||| || ||||| || || || || ||||||| ||||| | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 182229 CCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAAC 182288 ||| | |||||||| ||||| |||| ||||| | |||||||| || || |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 182289 TATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGT 182348 | |||| | || ||||| || ||||||||||| ||||||||||| || |||||||| ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 182349 GTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCT 182408 ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 241 Query 182409 TCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAA 182468 | || | || || ||||| | || || || | |||||||| || |||||| Sbjct 242 AGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAA 301 Query 182469 GAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAA 182528 || |||||||| |||||||| || || || || || || || ||||| || ||||||||| Sbjct 302 GAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAA 361 Query 182529 TACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTT 182588 || || ||||||||||| ||||| || ||||||||| | ||||| |||||||| || Sbjct 362 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTA 421 Query 182589 GGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAAC 182648 || ||||||||||| || | ||| | || |||||||||||||| || |||||||| Sbjct 422 GGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAAT 481 Query 182649 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTG 182708 |||||||| || | ||||| | || ||||| || |||| |||||||| ||| | | Sbjct 482 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 541 Query 182709 AACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTA 182768 ||||||||| ||||||||||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 542 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 601 Query 182769 GATCTTGCTGCT 182780 || | |||||| Sbjct 602 GACTTAGCTGCT 613 >seq21 Length=3603864 Score = 282 bits (312), Expect = 5e-71 Identities = 440/621 (71%), Gaps = 10/621 (2%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||||| ||| |||| || | | ||||||||||| |||||||||| || | ||| | Sbjct 2753422 ACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 2753480 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| || || || || | || ||| | ||||| ||||| || ||||| || ||||| Sbjct 2753481 GCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 2753539 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || || || || |||||| | || ||||| ||||| || ||||||||||| || | Sbjct 2753540 TCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTAT 2753599 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || || | | || || |||||| | || ||||| || | |||| Sbjct 2753600 TCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGA 2753659 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||| ||| | || || |||||||||| | || ||||| | |||||| | | || | Sbjct 2753660 TGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGG--T 2753717 Query 182114 CTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || | | ||||| ||||| ||||||||| || | || ||||||||||| || Sbjct 2753718 GTA-GCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTG 2753776 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||| || || || |||| || || || || | ||| | ||||| |||| || Sbjct 2753777 GATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCC 2753836 Query 182231 TTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTA 182290 | |||||||| || || ||| ||| | | |||||||| || || ||||||| Sbjct 2753837 TACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTT 2753896 Query 182291 TATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGT 182350 |||| | || ||||| || |||||||||| |||| |||||| || ||||| || ||||| Sbjct 2753897 TATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGT 2753956 Query 182351 AGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTC 182410 ||| ||||||||||| ||||| || || ||||| ||||| |||| ||||| || ||| Sbjct 2753957 AGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAG 2754015 Query 182411 ACTCGTCCGTGAGACGACTGA 182431 | || | ||||| ||||| Sbjct 2754016 TTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 244 bits (270), Expect = 1e-59 Identities = 335/466 (72%), Gaps = 3/466 (1%) Strand=Plus/Minus Query 181896 GCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCA 181955 || ||| | ||||| | ||| | ||||| || ||||| ||| | || | |||||| Sbjct 1370823 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 1370764 Query 181956 CTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGT 182015 | | ||||| ||||| || |||||||||| || | ||| | | || || || Sbjct 1370763 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 1370704 Query 182016 CTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGT 182075 | || || |||||||| ||||||||||| || |||||||| ||| | || || |||||| Sbjct 1370703 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 1370644 Query 182076 CCTTTCCAACTGGTTGTTTTCCACTTCCTGATCG-GCATCTACGCCTACATGGGACGTGA 182134 |||| | || ||||| | || ||| | | | | | || || ||||| ||||| Sbjct 1370643 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGT--TATATGGGTCGTGA 1370586 Query 182135 GTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCC 182194 |||||||||| || | | | ||||||| ||| ||||| ||| ||||| || ||||| Sbjct 1370585 GTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCC 1370526 Query 182195 AGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGA 182254 || || || || ||||||| ||||| | || || |||||||||| ||||| || Sbjct 1370525 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTGA 1370466 Query 182255 TGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCA 182314 || ||| | | |||||||| || || ||||||| |||| | || ||| | | ||||| Sbjct 1370465 TGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCA 1370406 Query 182315 CAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTA 182360 |||||| ||||||||||| || |||||||| |||||||| |||||| Sbjct 1370405 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 1370360 >seq9200 Length=658 Score = 154 bits (170), Expect = 2e-32 Identities = 208/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | |||||||| || |||| ||||||||||| || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | |||| | || || || || | || ||| | ||||| || Sbjct 413 ATGATCCCTACCTTATTGACCGCAA-CTTCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || ||||| || ||||| || || || || ||||||| | | ||||| ||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 || ||||||||||| || | || | || || || || | || || |||||||| Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 182079 ||||||||||| || ||||||| ||| | || || |||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 140 bits (154), Expect = 4e-28 Identities = 253/364 (70%), Gaps = 21/364 (6%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | || ||||| || |||| ||||| ||||| || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | ||||| ||||| || || | |||||| | || || || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || ||||| || ||||| || || || || ||||||| | | ||||| ||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 181973 CATCAT-----CTCTGGTGCTGTTGTCCCATCCTCCAAC----GCAATTGGTCTTCACTT 182023 || || ||||||||| || | || ||| | | || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 182024 CTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 182083 ||||| ||||||||||| || ||||||||||| | || || || ||||||| | Sbjct 5552 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 182084 ACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGA 182140 || ||||| | |||||| | | || | || || || ||||| ||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGA 5664 Query 182141 ACTT 182144 |||| Sbjct 5665 ACTT 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611605881886800