Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1065 601 4e-167 seq7681 448 5e-121 seq21 345 5e-90 seq46 325 4e-84 seq581 212 7e-50 seq9200 188 8e-43 seq1856 86.0 7e-12 >seq1065 Length=3091 Score = 601 bits (666), Expect = 4e-167 Identities = 742/1008 (74%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | |||| |||||||||||||| || |||||||| || | || || Sbjct 2428 GACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 2369 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||||||||| || || |||| Sbjct 2368 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2309 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| | || || ||||| ||||||| | ||||| | Sbjct 2308 TATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAA--TTTCTTAACGGCGGCGG 2251 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 2250 TTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGCAC 2191 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||||||||| | ||||| ||| | || || || ||| | ||||| |||||||| | Sbjct 2190 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATG 2131 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGT 166529 | |||||||| ||||| ||||||||| | || || |||||| | ||||| ||| | | Sbjct 2130 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 2071 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 | | || || |||||||| | || |||||||| || || || || ||| || || Sbjct 2070 -TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTATTC 2012 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 || || || || ||||| ||||| ||||||| || || || ||| || || |||| Sbjct 2011 CTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCT 1952 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || |||||| |||||||| | |||||||| || || ||||| ||||||| |||||| Sbjct 1951 ATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCAT 1892 Query 166710 ATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 166769 |||||||| || || || | | || | || |||| | || || ||||| | ||| Sbjct 1891 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTACT 1832 Query 166770 GTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCT 166829 ||||| |||||||| | |||||||||| || ||||| ||| || || || | Sbjct 1831 GTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACCCA 1772 Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| ||||||||| |||||||||||||| || ||||||| |||||| || ||||| Sbjct 1771 ACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTT 1712 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 1711 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACC 1652 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | |||| ||| | || || | |||| || ||||| ||||| ||||| |||||| Sbjct 1651 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGAC 1592 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 || |||||||| ||| | | ||||| || |||||||| ||||| || ||||| ||||| Sbjct 1591 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 1532 Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || || || || || |||||||| ||| | ||||||||| || ||||| |||||||| Sbjct 1531 AATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 1472 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | | | |||||||||| |||||||| || | || |||||||| ||| Sbjct 1471 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1424 >seq7681 Length=829 Score = 448 bits (496), Expect = 5e-121 Identities = 467/613 (76%), Gaps = 0/613 (0%) Strand=Plus/Plus Query 165138 TTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTA 165197 ||||||| || |||||| || ||||| || |||||| | || |||||| || | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 165198 TCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAA 165257 ||| | |||||||| ||||||||||||||||||||| | || |||||||||||||| || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 165258 CTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGG 165317 || |||| | || ||||| ||||| || ||||| ||||||||||| || |||||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 165318 CGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTC 165377 || ||||| |||||||| || || || ||| |||||||||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 165378 CTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACA 165437 | || | || || ||||||| || | || | ||||| || ||||| || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 165438 AGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCA 165497 ||| |||||||| |||||||| || ||||| ||||| || || ||||| | || ||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 165498 ATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGT 165557 ||| || |||||||| || ||||| | ||||||||| | || || ||||||||||| Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 165558 TGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAA 165617 || ||||||||||||||| | ||| |||| || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 165618 CTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCT 165677 |||||||| ||| | |||||||| || | || |||||||||||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 165678 GAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCT 165737 ||||||||| ||| ||||||||||| ||||| || ||||| |||||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 165738 CGACCTCGCTGCT 165750 ||| | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 345 bits (382), Expect = 5e-90 Identities = 426/577 (74%), Gaps = 4/577 (1%) Strand=Plus/Plus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCC 164844 ||||| || ||||||| | | ||||| |||||| | |||||||| || | | Sbjct 2753422 ACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 2753480 Query 164845 GCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTAT 164903 || || | || ||||||| || |||||||| ||||| || || || ||||||||||| Sbjct 2753481 GCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 2753539 Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963 |||||| ||||| |||||| |||| || || ||||| || ||||||||||| | | Sbjct 2753540 TCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTAT 2753599 Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023 ||| | |||| || ||| || | || || || || |||| ||||| ||| | || Sbjct 2753600 TCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGA 2753659 Query 165024 TGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGT 165083 ||||||||| ||||| |||||||||| || | |||| | |||||| | | ||||| Sbjct 2753660 TGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGT 2753719 Query 165084 AGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 165143 |||||| || ||||||||||| |||||||| || | | ||||||||||||||||| Sbjct 2753720 AGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGAT 2753779 Query 165144 TTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTT 165203 | || || ||| | ||||| || |||||| | || ||||| || |||| ||| Sbjct 2753780 TGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTAC 2753839 Query 165204 CGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 165263 |||||||| ||||| ||| |||||||| || | || |||||||||||||| |||| ||| Sbjct 2753840 TGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTAT 2753899 Query 165264 GTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGC 165323 | | || ||||| ||| | || ||||| |||| |||||| || ||||| | || || || Sbjct 2753900 GGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGC 2753959 Query 165324 TGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 165360 ||| |||||||| || || || ||| |||||||||| Sbjct 2753960 TGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT 2753995 >seq46 Length=2187656 Score = 325 bits (360), Expect = 4e-84 Identities = 364/485 (75%), Gaps = 1/485 (0%) Strand=Plus/Minus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| || ||||| || || | || | || |||||||||||||| | ||| | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 |||||| || | || || ||||| || |||||||||| | |||| ||| | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 || |||||| | || || || || ||||||||||||||| | | ||||||||||| ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 || ||||||||||| || | |||| | || ||| | | | ||||||||| || ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTG-TGTAGCTTGTTATATG 1370594 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || | | || ||||||| |||||||||| || |||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGT 165216 || ||||| || |||||| | || |||||| || | || || |||||||||| ||| Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 ||||||||||||||| || | || |||||||||||||| |||| |||| | || ||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 165336 | ||| || ||||| ||||||||||| || |||||| | || || ||||| ||| ||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGT 1370354 Query 165337 GGATC 165341 | ||| Sbjct 1370353 GCATC 1370349 >seq581 Length=5673 Score = 212 bits (234), Expect = 7e-50 Identities = 265/360 (74%), Gaps = 15/360 (4%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | ||||||||||| |||| |||||||||||| | Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | |||| || | ||| ||||||| || ||||||||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | || || ||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 164943 CATCAT-----CTCTGGTGCTGTCGTTCCGTC----TTCTAACGCAATCGGACTTCACTT 164993 || || ||||||||| | |||| | |||| || |||||| | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 164994 CTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCA 165053 || ||| ||||||||||| | | ||||| ||||| ||||| || |||||||| | Sbjct 5552 TTACCCT----GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 165054 GTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 165113 | | |||| | |||||| | | ||||||||||| || |||||||||||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 >seq9200 Length=658 Score = 188 bits (208), Expect = 8e-43 Identities = 216/288 (75%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | || |||||||| |||| ||||| |||||| | Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | |||| || | || ||||||| || |||||||| || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | || || ||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 || ||||||||||| | |||| ||||| || |||||| | || || || || || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTA 165050 ||||||||||||| | | ||||||||||| ||||| ||||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTA 639 >seq1856 Length=2117 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 165120 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGC 165179 ||| || |||||||||||||||||| || |||||| || ||||| || |||||| | Sbjct 2 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 61 Query 165180 CGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTA 165229 || |||||| || | | ||| | |||||||| ||||| ||||||| || Sbjct 62 TGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563577758672640