Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq7681 387 2e-102 seq21 259 6e-64 seq46 237 2e-57 seq9200 147 3e-30 seq581 125 8e-24 >seq7681 Length=829 Score = 387 bits (428), Expect = 2e-102 Identities = 451/609 (74%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 170064 TTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTA 170123 |||||| ||| |||||||| ||||| || |||| || ||||| ||||| | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 170124 TCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAA 170183 ||| | ||||| ||| |||||| || || |||||| |||| ||||| ||||| || || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 170184 CTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGG 170243 ||| ||| | |||||||| |||||||||||||| |||||||| ||||| || ||| ||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 170244 GGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATC 170303 || |||||| | ||||| || | || ||| || ||||| ||||| | ||||| || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 170304 TTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACA 170363 | | | ||||| || || || || || || || || | || |||||||| || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 170364 AGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCA 170423 ||| ||||| || || |||||||| || || || || || |||||| || | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 170424 ATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGT 170483 ||||||||| || ||||| |||| | | ||||||||| | ||| | | |||||||| Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 170484 ATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAA 170543 | | |||||||| ||| | | |||||| | || |||||||| ||||| ||||| || || Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 170544 CTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCT 170603 |||||||| || | || ||| | ||| || || ||| ||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 170604 TAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACT 170663 ||| | || || || ||||||||||||||||| || |||||||| ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 170664 TGACTTGGC 170672 ||||| || Sbjct 601 AGACTTAGC 609 >seq21 Length=3603864 Score = 259 bits (286), Expect = 6e-64 Identities = 414/593 (70%), Gaps = 1/593 (0%) Strand=Plus/Plus Query 169735 TGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCT 169794 ||||| ||||| ||||||||||| |||| | ||| | || ||||| | || Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCC 2753504 Query 169795 TTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTC 169854 |||||||||||||| || || || || ||||| || | || ||||| ||||| || Sbjct 2753505 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTA 2753564 Query 169855 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTC 169914 || ||||| ||||| || ||||||||||| || |||| | ||| || ||| | | Sbjct 2753565 ATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTG 2753624 Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974 || || || || |||| ||||| ||| | | ||||| ||||| || || ||||||||| Sbjct 2753625 CATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCT 2753684 Query 169975 TATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGG 170034 | | | || || | | |||||| | | || | || || |||||| | | ||| Sbjct 2753685 TGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGG 2753744 Query 170035 GAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTG 170094 ||||| | |||| ||||||||||||||||| ||| || ||||| |||| || Sbjct 2753745 GAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTT 2753804 Query 170095 TCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGA 170154 |||| || ||| | ||||| | || ||| ||||| ||| ||| || | || Sbjct 2753805 GCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGT 2753864 Query 170155 ATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAAC 170214 ||| || |||| ||||| ||||| || ||||| ||| | |||||||| ||| |||||||| Sbjct 2753865 ATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAAC 2753924 Query 170215 ATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTC 170274 || |||| ||| ||||| || || ||| || |||||| | ||||| || | || ||| Sbjct 2753925 ATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTC 2753983 Query 170275 TCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGA 170327 || ||||| |||| | ||||| ||| | | ||||| ||||| || || Sbjct 2753984 AGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 237 bits (262), Expect = 2e-57 Identities = 336/471 (71%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 ||||| | || ||||| ||||| | || | || || ||||| || | | ||| | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 169843 GCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 169902 ||||| || | ||||| ||||| || |||||||||| || ||||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || ||||| | || || || || ||||||||||| ||| |||| ||||| ||||| || Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 || |||||||||||| | || || | | || ||| ||| | | || || ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 1370594 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 ||| | |||||||||| | | || | ||||||| ||||||||| ||| |||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || |||| || ||||| ||||| | || || ||||||| ||| | Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 ||||| || || ||| || |||| ||||| ||||| || ||||| ||| | |||||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGT 170253 | |||||||||||| |||||||| ||||| || ||| ||| || |||||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 1370363 >seq9200 Length=658 Score = 147 bits (162), Expect = 3e-30 Identities = 200/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || | || ||||| ||||| ||||||||||| Sbjct 362 TGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 421 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | || ||||| | || ||||||||||| || || || || Sbjct 422 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 481 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||||| || | ||||| ||||| || |||||| Sbjct 482 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 541 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | || || || || ||||||||||| Sbjct 542 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 601 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 ||| || | ||||| ||||| || || |||||||||||| Sbjct 602 GCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 640 >seq581 Length=5673 Score = 125 bits (138), Expect = 8e-24 Identities = 238/350 (68%), Gaps = 13/350 (4%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 5322 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 5381 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | ||||||||||| || || || || || Sbjct 5382 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGAT 5441 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT---- 169874 || ||||| || | || ||||| | ||||| || | ||||| ||||| || || Sbjct 5442 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTA 5501 Query 169875 -CTCTGGTGCAGTTGTTCCATC----TTCAAACGCAATCGGTCTCCACTTCTATCCTATT 169929 ||||||||| || |||| | ||| || ||||| | ||||| || ||| Sbjct 5502 TCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCCT--- 5558 Query 169930 TGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATC 169989 ||||||| ||| || | ||||||||||| || || || ||||||||| | || || | Sbjct 5559 -GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 5617 Query 169990 TTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 170039 | |||||| | | || | || || |||||| | |||||||||| Sbjct 5618 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582762131918400