Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq7681 448 5e-121 seq21 307 1e-78 seq46 279 6e-70 seq9200 134 2e-26 seq581 131 2e-25 >seq7681 Length=829 Score = 448 bits (496), Expect = 5e-121 Identities = 457/596 (77%), Gaps = 0/596 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 597 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 538 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 537 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 478 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || |||||||| || |||| ||| | ||||| ||||| || || || Sbjct 477 AAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTACT 418 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 417 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 358 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||||| || || ||||||||||| ||||| |||||||| || || |||||| Sbjct 357 AAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCTCTTCCTCTTGA 298 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || |||||||| | || || ||||||| || ||||| | ||| | | ||| Sbjct 297 CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAG 238 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 237 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 178 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| ||||||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 177 AACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTG 118 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || | ||||| |||||||||||| ||||| || | ||| || Sbjct 117 AAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 58 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCA 84580 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| Sbjct 57 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 2 >seq21 Length=3603864 Score = 307 bits (340), Expect = 1e-78 Identities = 430/599 (72%), Gaps = 3/599 (1%) Strand=Plus/Minus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 || |||| || || || | ||| | | ||| || || | |||| |||||| ||| || Sbjct 2754041 CAGTTTCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGA 2753982 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||||| || || || |||||||| |||||| ||||||||| Sbjct 2753981 ATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGT 2753923 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | || | |||||||| |||| ||| ||||||| || || ||||| || | | ||| | Sbjct 2753922 TGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATAC 2753863 Query 84493 CATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAA 84552 ||| ||| ||| ||||| || ||| || | | ||| | ||| | || ||||||| Sbjct 2753862 CATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCTGCAA 2753803 Query 84553 CTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCC 84612 | |||| || || |||||| ||||| ||||||||||| | || | |||||||| Sbjct 2753802 CAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAAGTTCCC 2753743 Query 84613 ATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAG 84672 ||||||||||||| ||| | | |||||| | |||||| | |||| || | | ||| Sbjct 2753742 ATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAG 2753683 Query 84673 GTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTA 84732 | |||||||| |||| |||||| || | | ||| ||||| |||| || || ||||| | Sbjct 2753682 GACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCA 2753623 Query 84733 GACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGA 84792 | || || ||| | |||| | ||||||||| || || |||||||| || || | Sbjct 2753622 ATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAATTA 2753563 Query 84793 GAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATG 84852 ||||||| || |||||||| ||||| |||||||| ||||| || || | | ||| | Sbjct 2753562 AAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAGG 2753503 Query 84853 CAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCA 84910 | || || || || || ||| |||| | || || || ||||| | | |||||||| Sbjct 2753502 CGATAATAAATACGGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 2753445 >seq46 Length=2187656 Score = 279 bits (308), Expect = 6e-70 Identities = 349/475 (73%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 84389 TACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||||||| || || ||||||||||| ||||||||||||||||| || || ||| ||| Sbjct 1370360 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 1370419 Query 84449 GACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACC 84508 |||| ||| ||||||| || || ||||| || | | ||| |||||||||||| || Sbjct 1370420 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 1370479 Query 84509 TTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGC 84568 ||| |||| || || | | ||| ||||||| || |||||||| ||||| || || || Sbjct 1370480 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 1370539 Query 84569 AACACAGATCCATGGACGCATACCGAGAC-GATATGAAAGTTCCCATTCACGACCCATGT 84627 |||| ||||| ||| ||||||| |||| || || ||||||||| ||||||||||| | Sbjct 1370540 AACAGCAATCCAAGGATGCATACCCAGACAGAAAT-TAAGTTCCCACTCACGACCCATAT 1370598 Query 84628 AAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATA 84687 || | | || ||| | ||| || | |||| || | |||||| |||||||| |||| Sbjct 1370599 AACAAGCTACA-CAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 1370657 Query 84688 GCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAG 84747 |||||| || | | ||| ||||||||||| || || ||||| | || || || | Sbjct 1370658 ACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAC 1370717 Query 84748 AGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTG 84807 | | ||||| | | ||||||| || || |||||||| || | | ||||||| | | Sbjct 1370718 AAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAG 1370777 Query 84808 GCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA 84862 ||| || ||||| |||||||| | ||| | || ||| ||| || || || || Sbjct 1370778 GCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAA 1370832 >seq9200 Length=658 Score = 134 bits (148), Expect = 2e-26 Identities = 212/301 (70%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 84657 ACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAA 84716 |||| || | |||||| |||||||| |||| |||||| || | | ||| ||||||||| Sbjct 651 ACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAA 592 Query 84717 ATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATG 84776 || || || ||||| | || || || ||| | |||| | ||||||||| || || Sbjct 591 ATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 532 Query 84777 TTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGG 84836 |||||||| || | | |||||||| || |||||||| ||||| |||||||| ||||| Sbjct 531 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 472 Query 84837 GGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCAT 84895 || || | | ||| || || || || || || ||| || | | || || || ||||| Sbjct 471 GGGGCTGCGATGAAGGCGATAATAAATACGGA-AGTTGCGGTCAATAAGGTAGGGATCAT 413 Query 84896 AAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 | | |||||||| || | || | ||| || | ||| || | ||| | ||||| Sbjct 412 CAAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAA 353 Query 84956 G 84956 | Sbjct 352 G 352 >seq581 Length=5673 Score = 131 bits (144), Expect = 2e-25 Identities = 248/362 (69%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 84605 AAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAG 84664 ||||||||| ||||||||||| ||| | | |||||| | |||||| | |||| || Sbjct 5668 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 5609 Query 84665 TTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATA 84724 | |||||| || ||||| |||| ||| || || | | ||| ||||||| ||| || Sbjct 5608 CTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCC----AGGGTA 5553 Query 84725 GAAATGTAGACCAATAGCATTAG----AGGATGGAACTACGGCACCAG-----AAATGAT 84775 || || | || || || || ||| |||| | |||||||| | || || Sbjct 5552 AAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAAT 5493 Query 84776 GTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGG 84835 |||||||| || | | |||||||| || |||||||| ||||| |||||||| ||||| Sbjct 5492 ATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGG 5433 Query 84836 GGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCA 84894 || ||| | | ||| || || || || ||||| ||| || | | || || || |||| Sbjct 5432 AGGGGCAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCA 5374 Query 84895 TAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGA 84954 | | | || ||||| || | || | |||||| | ||| || | ||| | |||| Sbjct 5373 TCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGA 5314 Query 84955 AG 84956 || Sbjct 5313 AG 5312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571189437116880