Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq48 120 2e-21 seq10 120 2e-21 seq38 98.7 8e-15 seq75 96.9 3e-14 seq53 93.3 3e-13 seq128 91.5 1e-12 seq71 91.5 1e-12 seq9 91.5 1e-12 seq47 89.7 4e-12 seq18 89.7 4e-12 seq63 87.8 1e-11 seq45 86.0 5e-11 >seq48 Length=2155392 Score = 120 bits (132), Expect = 2e-21 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || ||||||||||| || || || ||| | ||| | Sbjct 164248 AAATTACAAAAGCAGTGGTCACAGTTCCAGCATATTTCAACGATTCGCAAAGAACAGCAA 164307 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| |||||| | ||||| |||||||| |||||||| |||| Sbjct 164308 CAAAAGATGCTGGCCGTATTGCGGGACTTGAGGTTCTCCGTATTATAAATGAACCAACTG 164367 Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545 |||| |||| || ||||| ||| | ||| ||||||| Sbjct 164368 CTGCATCACTGGCCTATGGTTTTGAGAAGAAAAATAATGA 164407 >seq10 Length=5007788 Score = 120 bits (132), Expect = 2e-21 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | || || ||||||||||| ||||| |||||| | ||| | Sbjct 3219285 AAATTACAAAAGCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAA 3219344 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| ||||| | |||||||||||||| || ||||| |||| Sbjct 3219345 CAAAAGATGCTGGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTG 3219404 Query 550509 CTGCTGCACTTGCATATGGACTTG---ATAAACATAATGA 550545 |||| || | || ||||| ||| | ||| ||||||| Sbjct 3219405 CTGCATCATTGGCTTATGGCTTTGAGAAGAAAAATAATGA 3219444 Score = 86.0 bits (94), Expect = 5e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 361692 TTTTACTTC-CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATA 361750 |||| |||| ||| |||||||| ||||| ||||| ||||||||||| || || || | Sbjct 3219438 TTTTTCTTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGA 3219379 Query 361751 ACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAA 361810 || | ||||| || || |||||| || ||| | ||||| |||||| ||| Sbjct 3219378 ACCTCCAGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAA 3219319 Query 361811 TATGCAGGAACAGTAATCACTGCTTTT 361837 ||||| ||||| |||| ||||||||| Sbjct 3219318 TATGCTGGAACTGTAACAACTGCTTTT 3219292 >seq38 Length=2547764 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || || || |||||||| || | || || || || |||| Sbjct 1910724 ATGCTGTTGTCACAGTTCCTGCCTACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 1910783 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 1910784 CTGGAGTGATTGCTGGTCTCAATGTGCTCCGTATCATCAATGAGCCAACTGCTGCTGCTA 1910843 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 1910844 TTGCCTATGGTCTCGACAA 1910862 >seq75 Length=1486890 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || |||||||| |||||||| || | ||| || ||||||||| Sbjct 129305 GCTGTGATCACTGTCCCTGCATATTTCAATGACTCGCAGAGGACAGCAACAAAAGATGCT 129246 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| | | ||||| |||||||| ||||| |||||||| || || | Sbjct 129245 GGCCGCATTGCTGGGTTGGAGGTTCTGCGTATTATAAATGAGCCTACTGCCGCATCATTG 129186 Query 550520 GCATATGG 550527 ||||| || Sbjct 129185 GCATACGG 129178 >seq53 Length=1972613 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||||| || ||| || | || || || ||||| ||||||||||| ||||| | || | Sbjct 39835 TTGGTAAATCTGTTTCGAAGGCTGTGATTACTGTTCCAGCATATTTCAATGATGCGCAGC 39776 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||| || || |||||||| || || |||||||| || |||| | ||||| |||| Sbjct 39775 GTCAGGCCACAAAAGATGCAGGCCGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATG 39716 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGA 550528 |||| || || ||||| || | |||||| Sbjct 39715 AACCAACGGCAGCTGCTCTGTCTTATGGA 39687 >seq128 Length=654355 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || |||||||| || | || || || || ||||| || ||| Sbjct 502409 ACAGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATGCGGGTGTGATT 502468 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || ||||| || ||||| |||||||| || ||||||||||| |||| ||||| Sbjct 502469 GCTGGTCTGAATGTCCTCCGTATCATCAATGAGCCCACTGCTGCTGCTATTGCCTATGGT 502528 Query 550529 CTTGATAA 550536 ||||| || Sbjct 502529 CTTGACAA 502536 >seq71 Length=1586662 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||||| | ||||| | || | || || ||||||| Sbjct 1111341 CAGCATCCATGCCATCTTCTCCATATAGGAACTGAATGACATCTCCCAATGA-ATTTCTT 1111399 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 || ||||||||||| | || | ||||| || | ||| || | | | | |||||| Sbjct 1111400 ACAGTACCATCATATTTGACCATGATGTCCTCCATAGCTTTCACAAGTCTCCGCTGGATA 1111459 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| || | ||| || | ||||||| ||| | |||||| || || ||||| | Sbjct 1111460 TAGCCAGTCTCAGAAGTCTTCACGGCAGTATCAATCAGACCTTCCCTACCACCCATAGCA 1111519 Query 390982 TGGAAGAAAAATTC 390995 |||||||||||||| Sbjct 1111520 TGGAAGAAAAATTC 1111533 >seq9 Length=5113091 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || || || ||||| || ||||| || | || || || || || ||||| | Sbjct 3116249 TAACAGTGCCTGCCTATTTCAACGACTCGCAGAGGCAGGCCACCAAGGACGCTGGTGTCA 3116190 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || || ||||| | ||||| ||||||||||| ||||||||||| |||| |||| Sbjct 3116189 TTGCCGGCCTCAATGTGATGCGTATAATCAATGAACCCACTGCTGCTGCCATTGCCTATG 3116130 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 3116129 GTCTTGACAA 3116120 >seq47 Length=2158321 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| ||| |||||||| || || ||||| Sbjct 1955114 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCACCGCGTCAAGCCACAAAGGATGCA 1955055 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || ||||| | || ||||||||||| || || ||||| || Sbjct 1955054 GGTCGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTG 1954995 Query 550520 GCATATGGA 550528 | |||||| Sbjct 1954994 TCTTATGGA 1954986 Score = 86.0 bits (94), Expect = 5e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 ||||||| | | ||| ||||||||||| || || ||| | ||||| ||| || || Sbjct 1954987 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 1955046 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || |||||| ||||||||||| |||||||||| ||||| || ||||||||| Sbjct 1955047 ATCCGACCTGCATCCTTTGTGGCTTGACGCGGTGCATCATTGAAATAAGCTGGAACAGTA 1955106 Query 361826 ATCACTGCTTTT 361837 ||||| || ||| Sbjct 1955107 ATCACAGCCTTT 1955118 >seq18 Length=3692672 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || ||||| ||||| | || ||||| ||||| || |||||| Sbjct 768166 GCTGTTATTACTGTCCCTGCTTATTTCAATGATGCTCAGCGTCAGGCTACAAAGGATGCT 768225 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| ||| | || | | ||||||||||| || |||||||| || || Sbjct 768226 GGTAGAATTGCTGGGCTTGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTG 768285 Query 550520 GCATATGGA 550528 | |||||| Sbjct 768286 TCCTATGGA 768294 >seq63 Length=1736770 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 ||||||||| ||||||||||| | || | ||||| || | ||| || | | | | Sbjct 1024736 ATTTCTTACAGTACCATCATATTTAACCATGATGTCCTCCATAGCTTTCACAAGTCTCCG 1024677 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||| ||||| || | ||| || | || ||| ||| | ||||||||| || | Sbjct 1024676 TTGGATATAGCCAGTCTCAGAAGTCTTCACAGCTATATCAATCAGACCTTCTCTACCACC 1024617 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | |||||||||||||| Sbjct 1024616 CATAGCATGGAAGAAAAATTC 1024596 >seq45 Length=2202424 Score = 86.0 bits (94), Expect = 5e-11 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || || || |||||| || || || ||||||||||| || || Sbjct 1623234 CCTGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGTATGTTGTAATCAGCGAGTGT 1623175 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||| ||||| || || |||||||| ||||| || ||||| || ||||| || || Sbjct 1623174 GCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCC 1623115 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || || || || || || || || ||||| || |||| || | || || | Sbjct 1623114 CTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAG-AAGACTCCACCTCAA 1623056 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | || || || || || || || ||||| || |||||| Sbjct 1623055 GGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 1623012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028672703165140