Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq7681 347 4e-91 seq21 230 7e-56 seq46 214 5e-51 seq581 156 1e-33 seq9200 154 4e-33 >seq7681 Length=829 Score = 347 bits (384), Expect = 4e-91 Identities = 444/609 (73%), Gaps = 2/609 (0%) Strand=Plus/Plus Query 26177 TGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTAT 26236 ||||| |||||||||| |||| || | | || ||| || || ||||| |||| Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 26237 CCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAAC 26296 ||| | || ||||| ||||| |||||| |||||| | || |||||||||||||| ||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 26297 TTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGT 26356 |||||| | |||||||| ||||| || || || || ||||| ||||| || ||| ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 26357 GTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCC 26416 || ||||| || ||||| || | || ||| ||||||||| || ||||| || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 241 Query 26417 TCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAA 26476 | || ||||| || || | | || ||| | || || || ||||| ||| Sbjct 242 AGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAA 301 Query 26477 GATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAG 26536 || |||||||| ||||| ||||| ||||| ||||| || ||||| ||||||| || || Sbjct 302 GAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAA 361 Query 26537 TATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTT 26596 ||||| ||||| || ||| |||||| | || ||||| | ||| ||||||| || || Sbjct 362 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTA 421 Query 26597 GGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAAC 26656 || || ||| | || || | ||||| | || |||||||| |||||||||||||| || Sbjct 422 GGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAAT 481 Query 26657 TTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATT 26715 || ||||| || ||||| ||| | || | | || || ||| ||||||||| | | Sbjct 482 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTGATATCAT 540 Query 26716 AAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACT 26775 ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||| || || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 26776 TGACTTAGC 26784 |||||||| Sbjct 601 AGACTTAGC 609 >seq21 Length=3603864 Score = 230 bits (254), Expect = 7e-56 Identities = 393/566 (69%), Gaps = 3/566 (1%) Strand=Plus/Plus Query 25833 GTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACAT 25892 |||| || || ||||||| || || | ||||| || |||| | | || ||| | Sbjct 2753431 GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCCG 2753490 Query 25893 GTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAG 25952 ||||| | |||||||||||||| || || |||||||| ||||| || |||||||| | Sbjct 2753491 TATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTG 2753550 Query 25953 TTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTA 26012 ||| || || ||||| || ||||||||||| || || || || | | || | ||| Sbjct 2753551 TTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTG 2753610 Query 26013 ACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGGACGAGTGGCTA 26071 || ||| || | ||||||||||| | || ||||| |||| | || || ||| || Sbjct 2753611 CAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGC-GGCATTTGTTGATGAATGGTTA 2753669 Query 26072 TACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATAT 26131 |||||||| || || | | | || ||| | | ||||||||| | || ||||| ||| Sbjct 2753670 TACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTAT 2753729 Query 26132 GCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCA 26191 || | | |||||||| || | | || ||| | || ||||| ||||||| Sbjct 2753730 ATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCC 2753789 Query 26192 TATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGG 26251 ||| || | || | | || ||| || | ||||| | || ||| || ||||| Sbjct 2753790 TATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGA 2753849 Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311 |||||| | |||| ||| || | || |||||||||||||| ||||||||| | |||||| Sbjct 2753850 AGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTC 2753909 Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTC 26371 || ||| | || || || || | ||| ||||| || || ||||| ||||| || ||| Sbjct 2753910 CAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTC 2753969 Query 26372 GGTGGAGCTCTTTTCGCTGCTATGCA 26397 || || | || ||| ||||||||| Sbjct 2753970 GGCGGTTC-CTATTCAGTGCTATGCA 2753994 >seq46 Length=2187656 Score = 214 bits (236), Expect = 5e-51 Identities = 332/473 (70%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| ||||| | || ||||||| ||||| || || |||| || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 | || || ||| | || ||||||||||| || || || | | | || | | | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 || |||||| | ||||||||||| || |||||||||| | || || || ||| ||||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCA 26134 ||||| || || ||| | || ||| | | || |||||| | | ||||| ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATG 1370594 Query 26135 GGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATAT 26194 || | |||||||||| || | | || || ||| || ||||| |||||||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 26195 ACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGT 26254 |||| || | | || ||| || || ||||| |||| || |||| ||||| ||| Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 26255 TTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAA 26314 || |||||| ||| || | || |||||||||||||| ||||||||| | |||||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 26315 GCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGT 26367 | ||| || || || || ||||| ||||| || ||| ||||| ||||| || Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq581 Length=5673 Score = 156 bits (172), Expect = 1e-33 Identities = 231/324 (71%), Gaps = 15/324 (5%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 5322 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 5381 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | || |||||||| || || || ||||| Sbjct 5382 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 5440 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATA-- 25987 ||| ||||| || |||||||| ||||| || || ||| | || ||||||||||| ||| Sbjct 5441 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATT 5500 Query 25988 ---TCAGGAGC----AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 || || || | || | || | ||| || |||||| | || ||||||| Sbjct 5501 ATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC---- 5556 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 ||||||||||| | | || |||||| ||||||||||||| || ||| | || ||| | Sbjct 5557 CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 5616 Query 26101 CTTCCACTTCTTAATAGGAGTAGC 26124 | ||||||||| | || ||||| Sbjct 5617 TCTACACTTCTTACTTGGTGTAGC 5640 >seq9200 Length=658 Score = 154 bits (170), Expect = 4e-33 Identities = 207/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || || ||||| || | |||||||| || || | ||||| || Sbjct 362 TGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 421 Query 25871 TGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGAT 25930 |||| | | || ||| | ||||| | |||||||||||||| || || |||||| Sbjct 422 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 481 Query 25931 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCA 25990 || ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 482 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 541 Query 25991 GGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCT 26050 || || | | || | ||| || |||||| | ||||||||||| || ||||||||| Sbjct 542 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCT 601 Query 26051 GGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | | | || || ||| |||||||||| || || ||| | || ||| Sbjct 602 GCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATT 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146705864356464