Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq7681 367 4e-97 seq21 282 1e-71 seq46 268 3e-67 seq9200 152 2e-32 seq581 147 7e-31 seq1856 84.2 7e-12 >seq7681 Length=829 Score = 367 bits (406), Expect = 4e-97 Identities = 453/615 (74%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||| ||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| | || | || | | |||||| || Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 494 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || || |||||||| | || | ||| || Sbjct 493 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 434 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||| |||||| |||||| || || || Sbjct 433 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 374 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || || ||||| || ||||||||||| Sbjct 373 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 314 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 |||||||| ||||| || ||||| || || | || ||||||| |||| ||||| Sbjct 313 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 254 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 253 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 197 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || ||||| | ||| || || |||||||||||||| ||||| |||||||| Sbjct 196 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 137 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| || || || || | ||||||||||||||||||||| Sbjct 136 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACT 77 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| |||||| | ||||| |||||| || ||||||||||| |||||||| Sbjct 76 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 17 Query 36566 AGCTACACATATCCA 36580 || ||| ||||| Sbjct 16 TGCAACAGCAATCCA 2 >seq21 Length=3603864 Score = 282 bits (312), Expect = 1e-71 Identities = 394/551 (72%), Gaps = 1/551 (0%) Strand=Plus/Minus Query 36360 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 36419 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 2753994 TGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2753936 Query 36420 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 36479 ||| ||||||| ||||| | |||||| || |||| |||||| |||||||| || || || Sbjct 2753935 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 2753876 Query 36480 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 || | || |||||||| ||| ||||| ||||| ||| |||||||| ||||| | ||| Sbjct 2753875 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCT 2753816 Query 36540 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTA 36599 || ||||||||||| | |||||| || ||| ||||| || | |||||| | | Sbjct 2753815 GTAGCAGCTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACAT 2753756 Query 36600 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACA 36659 ||||||||||||||| || |||| ||| | | ||||| | ||||| | ||| Sbjct 2753755 CAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 2753696 Query 36660 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 36719 || || | | | || || || || |||||||| || || | ||| ||||| || | | Sbjct 2753695 ATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGT 2753636 Query 36720 GGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTG 36779 ||||| || || | | ||| || || | || | || || |||||||| || ||| Sbjct 2753635 GGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTG 2753576 Query 36780 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 36839 |||||||| | ||| | || | |||||||||||||||||||| ||||| || ||||| Sbjct 2753575 TTTCCATAAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGA 2753516 Query 36840 GCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGT 36899 || || | || || || | |||| | | ||| || || | | ||||||||| | Sbjct 2753515 GCTGCGATGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAA 2753456 Query 36900 ACCCCAAACCA 36910 || |||||||| Sbjct 2753455 ACACCAAACCA 2753445 >seq46 Length=2187656 Score = 268 bits (296), Expect = 3e-67 Identities = 345/475 (73%), Gaps = 1/475 (0%) Strand=Plus/Plus Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||| || || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || Sbjct 1370360 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 1370419 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| |||||| |||||||| || || || || | || |||||||||||||||||| || Sbjct 1370420 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 1370479 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| || | || ||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 1370480 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 1370539 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || |||||| || | || |||||||||| | || |||| || Sbjct 1370540 AACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATA 1370599 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | || | | || || || | ||||| || | ||| || || || || ||||| Sbjct 1370600 ACAAGCTACACAAGTAAG-AACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 1370658 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || || || | |||||||||||| |||||||| || || | ||||| || | Sbjct 1370659 CCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACA 1370718 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | ||| | || | |||||||| || ||||||||||| ||||| | || | | ||| Sbjct 1370719 AGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGG 1370778 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 || ||||||||||| ||||| | ||| | || |||| || || || | |||| Sbjct 1370779 CTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT 1370833 >seq9200 Length=658 Score = 152 bits (168), Expect = 2e-32 Identities = 209/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 36657 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 36716 ||||| || | ||| || || || || |||||||| || || | | |||||||||||| Sbjct 651 ACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAA 592 Query 36717 ATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATG 36776 |||||||| || || | ||||| || || | || | || || |||||||| || Sbjct 591 ATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 532 Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||||||||||| ||||| | || || |||||||||||||||||||| ||||| || ||| Sbjct 531 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 472 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || || || | || || || | |||| | | ||| || || | | ||||||||| Sbjct 471 GGGGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATC 412 Query 36897 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 | || |||||||| || | || || || || | || || || | ||||| Sbjct 411 AAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGT 360 >seq581 Length=5673 Score = 147 bits (162), Expect = 7e-31 Identities = 247/357 (69%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 36601 AACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAA 36660 ||||||||||||| | || |||| ||| | | ||||| | ||||| | |||| Sbjct 5672 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 5613 Query 36661 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 36720 | || | ||| || || || || ||||||||||| || | | ||||||||||||| Sbjct 5612 TTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG---- 5557 Query 36721 GGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATT----GCCCCAGAGATGATG 36776 |||| ||||| | ||||| || || | || | || | || |||||||| || Sbjct 5556 GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATA 5497 Query 36777 T-----TGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCA 36831 | |||||||||| ||||| | || || |||||||||||||||||||| ||||| | Sbjct 5496 TAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTA 5437 Query 36832 CGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGA 36891 | ||||| ||||| | || || || | |||| | | ||| || || | | ||||| Sbjct 5436 CTGGAGGGGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA 5377 Query 36892 TCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 |||| | || || ||||| || | || || ||||| | || || || | ||||| Sbjct 5376 TCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 5320 >seq1856 Length=2117 Score = 84.2 bits (92), Expect = 7e-12 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36490 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTG 36549 || ||||||| ||||| ||||| |||| ||||| | ||||| |||||| || |||| Sbjct 111 TAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTG 52 Query 36550 CAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAG 36595 ||||||| |||||||| || ||| ||||| || | |||||| || Sbjct 51 CAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150433342590244