Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq7681 398 2e-106 seq21 264 3e-66 seq46 230 7e-56 seq581 150 5e-32 seq9200 143 8e-30 >seq7681 Length=829 Score = 398 bits (440), Expect = 2e-106 Identities = 460/616 (75%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 497 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || || || || || || |||||||| || || | || Sbjct 496 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGC 437 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||||| |||||| |||||| ||| || Sbjct 436 AGTGAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 377 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 ||| || |||||||| |||||||| | || ||||| || || ||||| || |||||||| Sbjct 376 GTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTT 317 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| || ||||||||||| || ||||| || || | || ||| | |||| || Sbjct 316 ATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGT 257 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | ||| || || | |||||||||||| ||| | | || || Sbjct 256 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 197 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || |||||||||||||| ||||| |||||||| Sbjct 196 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 137 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||||||||| |||||||||||||| || | ||||||||||||| |||||| Sbjct 136 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACT 77 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786 ||| || || | |||||| | || || || | |||| || || ||||| || ||||||| Sbjct 76 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAAT 18 Query 5787 ATGCTACGCAAATCCA 5802 |||| || |||||| Sbjct 17 ATGCAACAGCAATCCA 2 >seq21 Length=3603864 Score = 264 bits (292), Expect = 3e-66 Identities = 423/600 (71%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 5581 ATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGG 5640 |||||||||| ||| | | || |||||||| ||||| ||||| | ||||| || || Sbjct 2753995 ATGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGG 2753937 Query 5641 ATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 5700 |||| ||||||| ||||| | |||||||||||| | ||||||||| |||||||||||||| Sbjct 2753936 ATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGAT 2753877 Query 5701 ACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAA--AAATA-C 5757 || | || |||||||| | |||||||| || || |||||| | || ||||| | Sbjct 2753876 TCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGC 2753817 Query 5758 TGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 || ||| | || ||||| || | |||||| || || |||||| || ||||| || || Sbjct 2753816 TG--TAG-CAGCTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAA 2753760 Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAA 5877 | ||||||||||||||| || |||| ||| || | ||||| | |||||| | Sbjct 2753759 ACATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAG 2753700 Query 5878 GACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCA 5937 || | || | | || || |||||||| | ||||||||| | | || ||||| || Sbjct 2753699 AACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCA 2753640 Query 5938 GATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGAT 5997 | || || || || || | || || || || | || ||| || || || || Sbjct 2753639 AAGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAAT 2753580 Query 5998 GTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGG 6057 ||||||||||| | || ||| || || || ||||| || || || || || ||||| Sbjct 2753579 ATTGTTTCCATAAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGG 2753520 Query 6058 GGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCAT 6117 || || || | ||| || | |||||| | | |||||| || || | | || ||||| Sbjct 2753519 AGGAGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCAT 2753460 Query 6118 TAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||||||||| | || || || | || ||||| ||||| | | ||| ||||| Sbjct 2753459 CAAAACACCAAACCATCGCATGTAAAGAC-ATTTTTGGTTCTAGTTATCAAGTTGCAGAA 2753401 >seq46 Length=2187656 Score = 230 bits (254), Expect = 7e-56 Identities = 350/493 (71%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| ||||| | |||||| || |||||||||||||| ||||| ||| ||| ||| Sbjct 1370360 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 1370419 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| |||||||||||||| || | || |||||||||| ||||||||| Sbjct 1370420 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 1370479 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || |||| || ||| | || || || | |||| || || ||||| || |||||||||| Sbjct 1370480 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATG 1370538 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || |||| || | | | || |||||||||| | || |||| | Sbjct 1370539 CAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATAT 1370598 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | || | ||| ||| || | || | || | || || || |||||||| | Sbjct 1370599 AACAAGCTACACAAGTAA-GAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 1370657 Query 5910 GCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 ||||||||| ||| || |||||||| || || || || || || || || || Sbjct 1370658 ACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAC 1370717 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | | || | || | | || || || || ||||||||||| |||| ||| || | | Sbjct 1370718 AAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAG 1370777 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 | | || || || || || || | ||| | || || | ||| || | |||||| | Sbjct 1370778 GCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT-AGG 1370836 Query 6090 TAGTTGCGGTTAA 6102 ||||||||| || Sbjct 1370837 AAGTTGCGGTCAA 1370849 >seq581 Length=5673 Score = 150 bits (166), Expect = 5e-32 Identities = 252/364 (69%), Gaps = 13/364 (4%) Strand=Plus/Minus Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882 ||||||||||||| | || |||| ||| || | ||||| | |||||| | || | Sbjct 5672 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 5613 Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGG 5942 || | || || || |||||||| | ||| ||||| | | || ||||||||| Sbjct 5612 TTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG---- 5557 Query 5943 GATAGAAGTGTAACCCAATTGC----GTTGGAGCTGGGTACAACGGCTCCTGA-----TA 5993 | || ||||| || || || || | | || | || | || ||| || || || Sbjct 5556 GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATA 5497 Query 5994 TGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGA 6053 | || ||||||||||| |||| ||| || | || || ||||| || || || || || | Sbjct 5496 TAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTA 5437 Query 6054 CTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTA 6113 |||| || ||||| | ||| || | |||||| ||| ||||||||| || | | || | Sbjct 5436 CTGGAGGGGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA 5377 Query 6114 TCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCAC 6173 |||| || ||||| ||||| || | || || ||||| | ||||||||| | ||||| | Sbjct 5376 TCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGC 5317 Query 6174 AGAA 6177 |||| Sbjct 5316 AGAA 5313 >seq9200 Length=658 Score = 143 bits (158), Expect = 8e-30 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || || |||||||| | ||||||||| | | || |||||||| || || || || Sbjct 639 TAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAA 580 Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010 || || || || || || | || | || ||| || || || || ||||||||||| Sbjct 579 TGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAA 520 Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACG 6070 |||| ||| || | || || ||||| || || || || || ||||| || || || | | Sbjct 519 AGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCGATG 460 Query 6071 AATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAAC 6130 || || | |||||| | | ||||||||| || | | || ||||| || ||||||||| Sbjct 459 AAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 400 Query 6131 CACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || | || || || || | ||||||||| | ||||| ||||| Sbjct 399 CATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAA 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152628235352796