Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq7681 378 2e-100 seq21 269 8e-68 seq46 250 8e-62 seq9200 152 2e-32 seq581 132 1e-26 >seq7681 Length=829 Score = 378 bits (418), Expect = 2e-100 Identities = 453/611 (74%), Gaps = 6/611 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 609 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 550 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 549 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 490 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || || |||||||| | || | ||| || | | Sbjct 489 TGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAAC 430 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||| |||||| ||| || || || Sbjct 429 CAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 370 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || || ||||| || ||||||||||| ||| Sbjct 369 CTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTC 310 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||||| || || | || ||||||| |||| ||||| | Sbjct 309 TCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTG 250 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 249 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 193 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| ||||| |||||||| || Sbjct 192 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAAT 133 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || | ||||||||||||||||||||| ||| Sbjct 132 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCT 73 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 72 TGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 13 Query 26050 ACACATATCCA 26060 ||| ||||| Sbjct 12 ACAGCAATCCA 2 >seq21 Length=3603864 Score = 269 bits (298), Expect = 8e-68 Identities = 391/551 (71%), Gaps = 1/551 (0%) Strand=Plus/Minus Query 25840 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 25899 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 2753994 TGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2753936 Query 25900 TGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATA 25959 ||| ||||||| ||||| | |||||| || |||| |||||| |||||||| || || || Sbjct 2753935 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 2753876 Query 25960 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || | || |||||||| ||| ||||| ||||| ||| |||||||| ||||| | ||| Sbjct 2753875 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCT 2753816 Query 26020 AATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTA 26079 || ||||||||||| | |||||| || ||| ||||| || | ||| || | | Sbjct 2753815 GTAGCAGCTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACAT 2753756 Query 26080 TAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACA 26139 ||||||||||||||| || |||| ||| | | || | | ||||| | ||| Sbjct 2753755 CAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 2753696 Query 26140 ATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 26199 || || | | | || ||||| || || ||||| || || | ||| ||||| || | | Sbjct 2753695 ATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGT 2753636 Query 26200 GGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTG 26259 ||||| || || | | ||| || ||| | || | || || || ||||| || ||| Sbjct 2753635 GGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTG 2753576 Query 26260 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 26319 |||||||| | ||| | || | |||||||||||||||||||| ||||| || ||||| Sbjct 2753575 TTTCCATAAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGA 2753516 Query 26320 GCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGT 26379 || || | || || || | |||| | | ||| || || | | ||||||||| | Sbjct 2753515 GCTGCGATGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAA 2753456 Query 26380 ACCCCAAACCA 26390 || |||||||| Sbjct 2753455 ACACCAAACCA 2753445 >seq46 Length=2187656 Score = 250 bits (276), Expect = 8e-62 Identities = 341/475 (72%), Gaps = 1/475 (0%) Strand=Plus/Plus Query 25869 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 25928 ||| || || ||||| | ||| || || |||||||||||||| ||||| ||| ||| || Sbjct 1370360 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 1370419 Query 25929 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 25988 |||| |||||| |||||||| || || || || | || |||||||||||||||||| || Sbjct 1370420 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 1370479 Query 25989 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 26048 ||| || | || ||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 1370480 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 1370539 Query 26049 TACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 26108 ||| ||||| || ||| || || | || |||||||||| | || |||| || Sbjct 1370540 AACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATA 1370599 Query 26109 AGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAA 26168 | | | | | || || || | ||||| || | ||| || ||||| || || || Sbjct 1370600 ACAAGCTACACAAGTAAG-AACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 1370658 Query 26169 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 26228 ||| || || || | |||||||||||| |||||||| || || | ||||| || | | Sbjct 1370659 CCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACA 1370718 Query 26229 TGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 26288 | || | || | || ||||| || ||||||||||| ||||| | || | | ||| Sbjct 1370719 AGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGG 1370778 Query 26289 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 || ||||||||||| ||||| | ||| | || |||| || || || | |||| Sbjct 1370779 CTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT 1370833 >seq9200 Length=658 Score = 152 bits (168), Expect = 2e-32 Identities = 209/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| || | ||| || ||||| || || ||||| || || | | |||||||||||| Sbjct 651 ACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAA 592 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 |||||||| || || | ||||| || ||| | || | || || || ||||| || Sbjct 591 ATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 532 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||||||||||| ||||| | || || |||||||||||||||||||| ||||| || ||| Sbjct 531 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 472 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || || || | || || || | |||| | | ||| || || | | ||||||||| Sbjct 471 GGGGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATC 412 Query 26377 AGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 | || |||||||| || | || || || || | || || || | ||||| Sbjct 411 AAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGT 360 >seq581 Length=5673 Score = 132 bits (146), Expect = 1e-26 Identities = 244/357 (68%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 26081 AACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAA 26140 ||||||||||||| | || |||| ||| | | || | | ||||| | |||| Sbjct 5672 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 5613 Query 26141 TAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 26200 | || | ||| || || || || || |||||||| || | | ||||||||||||| Sbjct 5612 TTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG---- 5557 Query 26201 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT----GCCCCTGAGATGATG 26256 |||| ||||| | ||||| || ||| | || | || | || || ||||| || Sbjct 5556 GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATA 5497 Query 26257 T-----TGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCA 26311 | |||||||||| ||||| | || || |||||||||||||||||||| ||||| | Sbjct 5496 TAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTA 5437 Query 26312 CGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGA 26371 | ||||| ||||| | || || || | |||| | | ||| || || | | ||||| Sbjct 5436 CTGGAGGGGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA 5377 Query 26372 TCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 |||| | || || ||||| || | || || ||||| | || || || | ||||| Sbjct 5376 TCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 5320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151972327165736