Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq68 107 2e-18 seq69 87.8 1e-12 seq22 87.8 1e-12 seq8 87.8 1e-12 >seq68 Length=1664768 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| || || || ||||| || || | || | | |||| ||| Sbjct 547891 ACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 547832 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| |||| |||||| || || || || ||||| || || || || Sbjct 547831 AGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 547772 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | |||||||| | |||| || ||| Sbjct 547771 ATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTG 547712 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 547711 CCAGTAAGCGTCTTCACAAAGATCTGCAT 547683 >seq69 Length=1663458 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || ||||| || || |||||||| || | ||||| |||| ||| Sbjct 149404 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCTCCCATCTTCC 149463 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 149464 AATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 149523 Query 101381 A 101381 | Sbjct 149524 A 149524 >seq22 Length=3457718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/228 (68%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | || | ||||| ||||| || || || ||||||||||| || Sbjct 1877426 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGC- 1877368 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 |||| || | |||||| || ||||| || | ||||| || || | || Sbjct 1877367 ----------CATCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGTGGG 1877318 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || ||| || ||| | || | ||||| || | || || Sbjct 1877317 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 1877258 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | || || || || | ||| || ||||| ||||||||| Sbjct 1877257 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 1877210 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || |||||||| || | || | | |||| || | ||| Sbjct 1876752 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAATGTACGGCCATCTTCTAGCTGC 1876693 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || || || || || ||||| ||||| || Sbjct 1876692 TTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGAATCTTG 1876633 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| | || | || || || ||||||| || ||||| || Sbjct 1876632 GCCTTAACATTGTCGATCGTGCCCGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTC 1876573 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 1876572 AGTGTCTTGACGAATATCTGCAT 1876550 >seq8 Length=5380884 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || |||||||| || || ||||| || | ||||| |||| ||| Sbjct 1717775 ACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCC 1717834 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| ||||| |||| | || || || || |||||||| || || || ||| Sbjct 1717835 AATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 1717894 Query 101381 A 101381 | Sbjct 1717895 A 1717895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396221477827602