Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4152 105 5e-18 seq69 98.7 8e-16 seq8 89.7 4e-13 seq5 89.7 4e-13 seq68 87.8 1e-12 seq16 87.8 1e-12 seq45 82.4 6e-11 seq37 82.4 6e-11 >seq4152 Length=1438 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || || ||| || || || ||||| || | Sbjct 336 CGCCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 395 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||||||||| || ||||| ||||| || |||| | Sbjct 396 CGAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCG 455 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 456 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 515 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||||| || || || || ||||||||| || Sbjct 516 CCTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 568 >seq69 Length=1663458 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || ||||| || ||||| |||||| ||||| |||||||||| | Sbjct 149386 CCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 149445 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || ||||| |||||||| ||||| ||||| | || || || | |||| Sbjct 149446 AACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 149505 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 149506 ATGCCCTCCTTGTC 149519 >seq8 Length=5380884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| || ||||| || || || |||||||||||| || ||||||| | Sbjct 1717757 CCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCT 1717816 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || ||||| |||||||| ||||| ||||| | || || || | |||| Sbjct 1717817 AATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGA 1717876 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 1717877 ATGCCCTCCTTGTC 1717890 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| |||| || | || Sbjct 978715 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGG 978774 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| ||||| ||||| || |||| || | ||||||| Sbjct 978775 CCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 978834 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||||| || Sbjct 978835 TTGTCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCAGATGACTCAACCTCCAAAGTG 978894 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||||||||| Sbjct 978895 ATGGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 978932 >seq5 Length=5768508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || |||||| ||| || || || ||||| || | || | || Sbjct 1511101 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 1511042 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 1511041 CCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1510982 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 1510981 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTG 1510922 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||||| || || || || ||||||||| || Sbjct 1510921 ATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 1510880 >seq68 Length=1664768 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| || || | || || ||| ||| || || || ||||| |||| Sbjct 547454 GCCACCCCTGAGCCTCAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC 547395 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || |||| | || || | |||||| || ||||| || || ||||| || |||| ||| Sbjct 547394 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGG 547335 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | |||||| Sbjct 547334 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 547275 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||| || || || || || | || || || || |||||||| Sbjct 547274 CTCAAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 547227 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| || ||||| || || || ||| || || || ||||| |||| Sbjct 547226 GCCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 547167 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| ||||| || ||||| || || ||||| ||||||| ||| Sbjct 547166 AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGG 547107 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 547106 GATGCCCTCCTTGTC 547092 >seq16 Length=4050460 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 2369220 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 2369279 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| || || || || || ||||| || |||| | Sbjct 2369280 CGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCG 2369339 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 2369340 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 2369399 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 2369400 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 2369452 >seq45 Length=2202424 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || ||| ||| || || || ||||| |||| Sbjct 1622555 CCACCCCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 1622496 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | |||||| || ||||| || || | ||| || |||| ||| Sbjct 1622495 AGGGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 1622436 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || | ||||||| Sbjct 1622435 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTGTCAGAAGACTCCACC 1622376 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | || || ||||| ||||||||| Sbjct 1622375 TCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 1622328 >seq37 Length=2664577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || || ||| ||| || || || ||||| |||| Sbjct 1936948 GCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 1936889 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| || || || |||| | ||| || |||| ||| Sbjct 1936888 AAGGGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 1936829 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || ||| | | | || || | |||||| Sbjct 1936828 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCAC 1936769 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || || | || || ||||| |||||||| Sbjct 1936768 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 1936721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380882881408878