Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq7681 453 1e-122 seq21 259 5e-64 seq46 228 9e-55 seq9200 159 4e-34 seq581 129 6e-25 >seq7681 Length=829 Score = 453 bits (502), Expect = 1e-122 Identities = 471/616 (76%), Gaps = 6/616 (1%) Strand=Plus/Plus Query 162873 TTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTA 162932 |||||| ||||||||| || || || || | || || ||||| |||||| | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 162933 TCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAA 162992 ||| | |||||||| ||||||||| | |||||| | || || ||||||||||| || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 162993 CTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGG 163052 || ||| | || ||||| ||||||||||||||||| ||||| || || || ||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 163053 AGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTC 163112 || || ||||||||||| ||||| || || ||||||||||| ||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 163113 TTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACA 163172 | | | ||||| ||||| ||||| | || || || | ||||| || || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 163173 AGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCA 163232 ||| ||||||||||| |||||||| |||||||| || || |||||||| || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 163233 GTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGT 163292 ||||| |||||||||||| ||||| | ||||||||| | ||||| | ||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 163293 CTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAA 163352 | |||||||||||||| | ||| | ||||||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 163353 CTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATAT 163409 ||||||||||| || ||||| | |||| | || ||| ||||||||| ||||| Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCG---CGTTATTAATACTTGGGCTGATAT 537 Query 163410 CCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCC 163469 | | ||| | || |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 538 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCC 597 Query 163470 ACTTGACCTTGCTGCT 163485 || ||| | |||||| Sbjct 598 TCTAGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 259 bits (286), Expect = 5e-64 Identities = 419/599 (70%), Gaps = 13/599 (2%) Strand=Plus/Plus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATT 162600 ||||| ||||| |||||||||||| ||| | | ||||||| | || || || Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATT---GACTGCAACTTCCGTATTTATTATC 2753501 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || ||||| ||||| |||||||| ||||| |||||||| | || |||||| ||||| Sbjct 2753502 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCT 2753561 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | | ||||| ||||| || ||||||||||| | ||||| ||| || || | Sbjct 2753562 TTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGA 2753621 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || | || ||||| ||| | ||||||| ||||| || |||||||| Sbjct 2753622 TTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGT 2753681 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837 |||| | || | || | |||||| | | || | ||| | | | |||||| Sbjct 2753682 CCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGT 2753738 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 | ||||||||| || | || ||||||||||||||||| |||||| || || | Sbjct 2753739 GAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACT 2753798 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 || || | || || ||| | |||||| |||| ||| |||||||| ||| ||| Sbjct 2753799 CCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCT 2753858 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 | | ||| || | || || ||||||||||| |||| ||| | || ||||| ||| || Sbjct 2753859 AATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAG 2753918 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 ||||||||||| | ||| || || || || | || || || ||||||||||| ||||| Sbjct 2753919 CACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC- 2753977 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 || || ||||||||||| |||| | || || ||| | | ||||| || || ||||| Sbjct 2753978 CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 228 bits (252), Expect = 9e-55 Identities = 345/486 (71%), Gaps = 5/486 (1%) Strand=Plus/Minus Query 162583 GCAACTTGCT--TCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCA 162640 ||||||| || | || || || ||||||||||| | |||| | ||||| |||||||| Sbjct 1370843 GCAACTTCCTATTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTC 1370784 Query 162641 GAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTC 162700 | | ||| || ||||| | || ||||| ||||| || |||||||||| | ||| Sbjct 1370783 GCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTC 1370724 Query 162701 CTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATG 162760 | | || || || || | || || || || || |||||||| ||| ||||||||| Sbjct 1370723 CAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATG 1370664 Query 162761 AGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCG-GAATC 162819 | ||||| || |||||||| |||| | || | || | || ||| | | | | | | Sbjct 1370663 AATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGC 1370604 Query 162820 ACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATC 162879 ||| || |||||| ||||||||||| || | | | ||||||| ||||||||| Sbjct 1370603 TTGTTATA-TG-GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATT 1370546 Query 162880 TGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTC 162939 ||||||||| || || || || | || || ||||| |||||| | || || || Sbjct 1370545 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATC 1370486 Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 |||||||| ||||||||| | ||| || | || || ||||||||||| |||| ||| Sbjct 1370485 GGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATG 1370426 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA 163059 | || ||| | | ||||||||||||||| ||||| || || || ||| | || || || Sbjct 1370425 ATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 1370366 Query 163060 GGTGTA 163065 |||||| Sbjct 1370365 GGTGTA 1370360 >seq9200 Length=658 Score = 159 bits (176), Expect = 4e-34 Identities = 195/265 (74%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 162523 GACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCA 162582 || ||||| | || |||| ||||| ||||| |||||||||||| ||| | | Sbjct 377 GAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATT---GACC 433 Query 162583 GCAACTTGC---TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATC 162639 ||||||| | || || || || ||||| ||||| |||||||| ||||| |||||||| Sbjct 434 GCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATT 493 Query 162640 AGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTT 162699 | || |||||| | ||||| | || ||||| ||||| || ||||||||||| | || Sbjct 494 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 553 Query 162700 CCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGAT 162759 |||| ||| || || || | || || || || || |||||||| ||| || ||||| Sbjct 554 CCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 613 Query 162760 GAGTGGTTGTATAATGGTGGACCTT 162784 || ||||| || |||||||| |||| Sbjct 614 GAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 129 bits (142), Expect = 6e-25 Identities = 182/255 (71%), Gaps = 13/255 (5%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 5353 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 5412 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 5413 TCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 5472 Query 162659 CACTTCTCTATGGTAACA-----ACATCATCTCTGGTGC----TGTCGTTCCTAGTTCAA 162709 | | || ||||| |||| | || ||||||||||| || | |||| ||| Sbjct 5473 CTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTG 5532 Query 162710 ATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGT 162769 || || || | ||||| || | ||||||||| ||| || ||||||||||||| | Sbjct 5533 CGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTAT 5588 Query 162770 ATAATGGTGGACCTT 162784 | ||||| || |||| Sbjct 5589 ACAATGGCGGTCCTT 5603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553003316781840