Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1065 545 3e-150 seq7681 396 3e-105 seq21 264 1e-65 seq46 223 4e-53 seq9200 154 2e-32 seq581 147 2e-30 >seq1065 Length=3091 Score = 545 bits (604), Expect = 3e-150 Identities = 729/1008 (72%), Gaps = 4/1008 (0%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 || |||||| | | |||| || || |||||||| || |||||||| || | || || Sbjct 2428 GACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 2369 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 2368 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2309 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 || |||||||| | ||| ||||||| | ||||| ||| || || | || || || || Sbjct 2308 TATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTTAACGGCGGCGGT 2250 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | || ||| | | ||||| ||||| || || | || Sbjct 2249 TTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGCACA 2190 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| || Sbjct 2189 AGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGG 2130 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTA 164976 || || || ||||| ||||||||| | || || ||||| || || || ||| | | Sbjct 2129 GGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT- 2071 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | | ||||| ||||| ||| | ||||||||||| || || |||||||| ||| |||| Sbjct 2070 TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTATTCC 2011 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 |||| || |||||||| || || ||||||| || || ||| ||||| || ||||| | Sbjct 2010 TTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCTA 1951 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | ||| | |||||||| || || ||||| | |||||||| |||| Sbjct 1950 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCATA 1891 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| ||||| || | || || | || |||||| ||||||||||| | || | Sbjct 1890 TGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTACTG 1831 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | ||||| || ||| ||| ||||| || || |||||||| || ||| | | | Sbjct 1830 TAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACCCAA 1771 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 | || | ||||| |||||||| ||||| ||||| |||||||| ||||| || ||||| | Sbjct 1770 CTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTG 1711 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 165396 | |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | | Sbjct 1710 GTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCG 1651 Query 165397 GTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 165456 || | |||| |||||||| | |||| || ||||| ||||| ||||| || || | Sbjct 1650 GTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACT 1591 Query 165457 TCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 165516 |||| ||||| ||| | ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 1590 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 1531 Query 165517 ACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAA 165576 | ||||| || || || || | ||||| ||| ||||| || ||||| || ||||||| Sbjct 1530 ATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAA 1471 Query 165577 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 1470 ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 1423 >seq7681 Length=829 Score = 396 bits (438), Expect = 3e-105 Identities = 455/612 (74%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 163267 TGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTAT 163326 ||||| ||| ||||| || || ||||||||||| || | || || ||| || | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 163327 CCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAAC 163386 ||| | |||||||| ||||||||| | ||||| | || |||||||| || |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 163387 TACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGA 163446 | ||| |||| ||||| ||||||||||||||||| ||||| || || || ||||| || Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 163447 GTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCT 163506 || |||||||| ||||| || || || ||| || |||||||| | || |||||| Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 241 Query 163507 TCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAA 163566 | || | || || ||||||| ||| || || | |||||||| ||||||||| Sbjct 242 AGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAA 301 Query 163567 GAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 163626 || |||||||| || ||||| || || || || || || || ||||| || ||||||||| Sbjct 302 GAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAA 361 Query 163627 TATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTC 163686 ||||| ||||||||| | | | ||||||||| |||| || |||||||| || Sbjct 362 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTA 421 Query 163687 GGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 163746 || |||||||| ||||| | || | || || |||||||||||||| || |||||||| Sbjct 422 GGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAAT 481 Query 163747 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTT 163806 |||||||| || | ||||| | || ||||| || | || |||||||| || | | Sbjct 482 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 541 Query 163807 AACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTC 163866 ||||| ||| ||| ||||||||||| ||||| || ||||| || ||||||||||| || Sbjct 542 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 601 Query 163867 GATCTTGCTGCT 163878 || | |||||| Sbjct 602 GACTTAGCTGCT 613 >seq21 Length=3603864 Score = 264 bits (292), Expect = 1e-65 Identities = 454/651 (70%), Gaps = 10/651 (2%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | | | ||||| ||||| || | || || | | ||||| || || || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| || || || || |||||||| |||| ||||| Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCC 2753518 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || |||||| | || ||||| ||||| Sbjct 2753519 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAA 2753578 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || |||| | ||| || || | | || || || || | Sbjct 2753579 TATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACT 2753638 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 || ||||| |||| ||||||| ||| | || || |||||||||| | || | || Sbjct 2753639 TTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGT 2753698 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | |||||||| ||||||||||||||| | | Sbjct 2753699 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATG 2753758 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 || |||||||| || ||||| ||| || || || | ||||||||||| || | || Sbjct 2753759 TTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGC 2753818 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 | ||| || |||| ||| |||||||| ||| ||| | | ||| | | || || Sbjct 2753819 TATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAAT 2753878 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 |||||| || ||||||| ||| |||| ||||| ||| ||||||||||||| | ||| || Sbjct 2753879 CTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCC 2753938 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || || || || || || |||||||| ||||| || || || ||| || |||||| Sbjct 2753939 ATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCAT-- 2753995 Query 163491 CAGT--CTT-GTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTC 163538 ||| ||| || |||||| | || | ||||| ||||||||||| || Sbjct 2753996 -AGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGAAACTGAATC 2754045 >seq46 Length=2187656 Score = 223 bits (246), Expect = 4e-53 Identities = 350/493 (71%), Gaps = 6/493 (1%) Strand=Plus/Minus Query 162967 TTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGAC 163026 ||| | |||||| || ||| || |||||||| | || || | || | || ||||| Sbjct 1370849 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 1370791 Query 163027 GGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCA 163086 || || || |||| | |||||| | | ||||| ||||| || |||||||||| Sbjct 1370790 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 1370731 Query 163087 GTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 163146 || ||||| ||| || || || | || || || || || |||||||| ||||| Sbjct 1370730 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 1370671 Query 163147 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATC 163206 |||||||| ||| | || || |||||||||| | || | || | || ||| | | Sbjct 1370670 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 1370611 Query 163207 G-GCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCGCT-TAGGTATGCGCC 163264 | | | || || |||||||| ||||| ||||||||| || || | | ||||||| | Sbjct 1370610 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTA-ATTTCTGTCTGGGTATGCATC 1370554 Query 163265 CCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCT 163324 | ||||| ||| ||||| || || ||||||||||| || | || || ||| || | | Sbjct 1370553 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 1370494 Query 163325 ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCA 163384 | || |||||||||| ||||||||| | ||| | | || |||||||| || |||| Sbjct 1370493 ACGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCA 1370434 Query 163385 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGG 163444 ||| ||| |||| ||| | | ||||||||||||||| ||||| || || || ||||| | Sbjct 1370433 ACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 1370374 Query 163445 GAGTCGCTGGTGT 163457 | || |||||||| Sbjct 1370373 GTGTAGCTGGTGT 1370361 >seq9200 Length=658 Score = 154 bits (170), Expect = 2e-32 Identities = 208/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| || || || || |||||||| |||| || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || ||||||| | | ||||| ||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || |||| |||| || || || | || || || || || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 163177 |||||||| ||||| ||||||| ||| | || || |||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 147 bits (162), Expect = 2e-30 Identities = 251/361 (70%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || |||||||| || ||||||| | | ||||| ||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 163071 CATCAT-----CTCTGGTGCAGTTGTTCCATCTTCCAAC----GCAATTGGTCTTCACTT 163121 || || ||||||||| || |||| | | | | || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 163122 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 163181 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 5552 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 163182 ACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACT 163241 || | || | |||||| | | || | | |||||||| ||||| |||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Query 163242 T 163242 | Sbjct 5668 T 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563126625145680