Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq93 224 2e-53 seq131 215 1e-50 >seq93 Length=1192474 Score = 224 bits (248), Expect = 2e-53 Identities = 562/847 (66%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || | ||||| |||||||| ||||| |||| | ||||| ||| Sbjct 324924 CTGATACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTC 324983 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | ||| |||||| | ||| Sbjct 324984 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGT--GGCCCAGCGCCATGAGC 325041 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | || Sbjct 325042 AGGCGGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGC 325101 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | || | || ||||| |||||| | ||||| || | || ||| Sbjct 325102 GCGCAGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATC 325161 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| ||||| | | ||| ||| || | | ||||||| | ||| ||| Sbjct 325162 TCGCGGACGCGCGACTCGTCGAGCTTGACGCGGAGAAGAT---CATAGAGGAGGCACGCA 325218 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| || ||||| ||| ||||||| |||||||||| ||| || ||| Sbjct 325219 AAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGC 325278 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | | ||||||||||| || || |||||| || || |||||||||||| Sbjct 325279 ATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCC 325338 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||||||| ||||| ||| | |||||| || | | |||||| Sbjct 325339 TCGACGCAGGCGAACGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCCTCGATCCA 325394 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | ||||| || ||||| | ||| ||| | ||||||||||| |||| Sbjct 325395 GCGCATGGCCCACTCGGCCTT----GCGGCGCACGGCGGGGACGGTCTCTATGGCGCGGA 325450 Query 48372 A---GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | | | | ||| ||| | |||| | ||||| |||||| | ||||| Sbjct 325451 ACAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACA 325507 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||| ||||| | ||||| || Sbjct 325508 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGCCA 325567 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || || | ||| | | | ||| |||||| ||||| || || || || | Sbjct 325568 CCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCAAGCACTATGCCGTCGGAGGCGG 325627 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---ATTCC 48605 | |||||||| || || || | ||| |||||||||| | | |||| || | || Sbjct 325628 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGATTGAGCGCGGTGTCCC 325687 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || || | |||||||||||||| | || | Sbjct 325688 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCATCGGCGGTCCAGAAGGACGCCACCGCCT 325747 Query 48666 TTTTGTA 48672 | ||||| Sbjct 325748 TCTTGTA 325754 >seq131 Length=616296 Score = 215 bits (238), Expect = 1e-50 Identities = 575/870 (66%), Gaps = 33/870 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 272436 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTC 272495 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCAT--CTGTTCCA 47954 ||| || ||| ||||||| ||| |||| | | ||| | |||| | || | Sbjct 272496 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGT--GCCCCAAAGCCATT--A 272551 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 ||||| | || |||||| |||||| ||| | ||| || | ||||||||| | || Sbjct 272552 GCAGGCGGTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGA 272611 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||| | || | || ||||| ||| || | ||||| || | || | Sbjct 272612 GTGCGCAGGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGA 272671 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 ||| ||||||||||| | ||| ||| ||| | | | ||||| | ||| | Sbjct 272672 TCTCGCGGACGCGGGACTCGTCCAGCTTGACGCGGAGGAGGTCG---TAGAGAAGGCACG 272728 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || | Sbjct 272729 CGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 272788 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| ||| | | ||||||||||| || || ||| ||||| |||||||| |||| Sbjct 272789 GCATGAGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGC 272848 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATC 48313 |||| || ||||||||| || | ||| | |||||| || | | |||| Sbjct 272849 CCTCGACGCAGGCGAACGCGACAAGACGCTCGGC----GAAGCGCTCGCCGCCCTCGATC 272904 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCG 48369 ||| | | ||| || ||||| | ||| ||| | |||||||||||| || Sbjct 272905 CAGCGCATGGTCCACTCGGCCTT----GCGGCGCACGGCGGGGACCGTCTCTATGGCGCG 272960 Query 48370 GAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||||||| | ||| ||| | |||| | ||||| |||||| | ||| Sbjct 272961 GAAGAGCCGGTCCTT---CTCCGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTA 273017 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||||||||| |||||||| || | ||||| Sbjct 273018 CATCTCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCGTAGAACGCGCGCGCCTCGGC 273077 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||| || || | ||| | | | ||| ||||| || || || || || || Sbjct 273078 GACCTGGACGTCGGACATGAACCGCGACGCCAGGTTCTCGAGCACGATGCCGTCGGACGC 273137 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATT 48603 || |||||||| || || || | ||| |||||||||| | |||| || | Sbjct 273138 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCCGCGTTGAGCGCGGCGTC 273197 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | ||||| | |||||||| || || | |||||||| || || | || Sbjct 273198 CCAGTGCCGCACGTCGGCGGAGAGGTCCACCTCCTCGGCTGTCCAGAACGAGGCCACCGC 273257 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||||| | |||| || | ||| || Sbjct 273258 CTTCTTGTAGAACTCCCAGATCTGCGGGTA 273287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931395561930240