Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq93 176 8e-39 seq131 152 1e-31 >seq93 Length=1192474 Score = 176 bits (194), Expect = 8e-39 Identities = 395/575 (69%), Gaps = 24/575 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||||||||| ||| | || || Sbjct 325766 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGATGAGGTGGACCTC 325707 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || ||| | | |||| || |||| |||| ||||||| || || || Sbjct 325706 TCCGCCGACGCGCGCCACTGGGACACCGCGCTCAATCCC--GACGAGCGCCACTTCATCT 325649 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 ||||| | || ||||| || ||||| || || |||||| ||||| ||| ||| | Sbjct 325648 CCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATAGTGCTTGAGAACCTG-GCGTCG 325590 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| | ||||| | | ||| ||||| |||||||| || Sbjct 325589 CGGTTCATGTCCGACGTCCAGGTGGCCGAGGCGCGCGCCTTT-TACGGCTTCCAGATCGC 325531 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 |||||| || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 325530 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 325471 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||||||| || || ||||| | ||||| ||| | | ||| | | | ||||| Sbjct 325470 CGCCGAGAAGGACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGC 325411 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||||||||| |||||| | || ||||||| || ||||||||| || | Sbjct 325410 CGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCG 325355 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || ||||||||||| || || || || |||| ||||||||||||| Sbjct 325354 CGTTCGCCTGC-GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCG-CCATCTTCTGGCT 325297 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGAC 26004 |||| | | | || | |||||| || || ||||| ||||||||||||||| | | ||| Sbjct 325296 CAAGAA-ACGCGGCCTCATGCCGGGCCTC-ACTTTCTCCAACGAGCTCATCTCCCGCGAC 325239 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 |||||||| ||| | || ||||| ||||| ||||| Sbjct 325238 GAGGGTCTGCACTGCGACTTTGCGTGCCTCCTCTA 325204 >seq131 Length=616296 Score = 152 bits (168), Expect = 1e-31 Identities = 387/574 (67%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||| ||||| ||| | || || Sbjct 273278 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGTTCTGGACAGCCGAGGAGGTGGACCTC 273219 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAG---ACGAGCAGCATTTTCTCA 25591 || ||| || |||| ||| |||| ||| | |||||| || || || Sbjct 273218 TCCGCCGACGTG--CGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCACTTCATCT 273161 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-G 25650 ||||| | || ||||| || || || || || || ||| |||||| ||| ||| | Sbjct 273160 CCCACGTGCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCTG-GCGTCG 273102 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| || || ||| || ||||| | | ||| |||||| |||||||| || Sbjct 273101 CGGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCGTT-CTACGGCTTCCAGATCGC 273043 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 ||| || || | ||||| ||| |||| | ||| ||| ||| ||||| |||| Sbjct 273042 CATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGG 272983 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| |||| || ||||| || | ||||| ||| | ||| | | | ||||| Sbjct 272982 CGCGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTCCCCGCCGTGCGCCGCAAGGC 272923 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 |||| ||||| |||||| | || ||||||| || |||||| || || | Sbjct 272922 CGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGTCTTGTCG 272867 Query 25889 CCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | || || ||| || |||||||| || ||| || ||||| |||| ||||||||||||| Sbjct 272866 CGTTCGCCTGC-GTCGAGGGCATTTTCTTCTCGGGCTCGTTCTGCG-CCATCTTCTGGCT 272809 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| | ||| |||||| || || ||| ||||||||||||||| | | ||||| Sbjct 272808 CAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 272749 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| || ||| | || || || ||||| |||||| Sbjct 272748 GGGCCTGCACTGCGACTTCGCGTGCCTTCTCTAC 272715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928707957939840