Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1065 560 1e-154 seq7681 416 3e-111 seq21 333 3e-86 seq46 304 1e-77 seq581 156 4e-33 seq9200 143 3e-29 seq1856 91.5 2e-13 >seq1065 Length=3091 Score = 560 bits (620), Expect = 1e-154 Identities = 725/999 (73%), Gaps = 2/999 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | || |||||| | | |||| || || |||||||| || |||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||||||| | || | || || ||| |||| || ||||| ||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || |||||| || || ||| | || ||| || | || || ||| |||||| | Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTT 2262 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || ||||| || || || |||||| || | | | || ||| | | ||||| ||||| Sbjct 2261 AACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 2202 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 || || | || || ||||| || ||| || | || || || ||| ||||||| Sbjct 2201 ACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 2142 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || ||||| || || || || |||| || || |||||||| || ||||| || || | Sbjct 2141 CGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 2082 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 | || | | | ||||| ||||| || | || ||||| || || || |||||||| Sbjct 2081 GTCTGTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGT 2022 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 || ||||| || |||||||| || || ||| ||||||||||||| |||||||| || Sbjct 2021 TTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGG 1962 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 ||| || || || || || ||| | || ||| |||| || ||||||||||||||| | || Sbjct 1961 CGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 1902 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 ||||| ||||||||||||||||| || || | || | ||| || |||| || || || Sbjct 1901 CCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCA 1842 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | |||||||||||||| || | ||||||| || || || || ||| ||| Sbjct 1841 TGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGC 1782 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | ||||||| ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 1781 TTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTC 1722 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 ||| || ||||| |||||||| ||||||||| ||| | |||||||||||||| ||||| Sbjct 1721 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 1662 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||| || | ||| | |||| | ||||||| | |||| || ||||| || || || Sbjct 1661 ACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACG 1602 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 ||| || || || || || || || ||| | || | |||||||||||||||||||| || Sbjct 1601 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 1542 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 ||| || || ||||||||| | ||||| ||| ||||||| ||||||||| | || || Sbjct 1541 CTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 1482 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| || | ||||| || || ||||| || Sbjct 1481 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 1443 >seq7681 Length=829 Score = 416 bits (460), Expect = 3e-111 Identities = 460/613 (75%), Gaps = 0/613 (0%) Strand=Plus/Plus Query 8622 TTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTA 8681 |||||| ||||||||| || ||||||||||| |||||| ||||||| ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 8682 TCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAA 8741 ||| |||||||||| |||||||||||||||||| | || ||||| ||||| ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 8742 CTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGG 8801 || |||| |||| |||||||| |||||||||||||| ||||| || || |||||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 8802 TGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTC 8861 ||| |||||||| |||||||| || || || || ||||||||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 8862 TTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCA 8921 | || | | || ||||| |||| || ||| || | || ||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 8922 AGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCA 8981 ||| || || ||||| |||||||| || ||||| || || |||||||| || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 8982 ATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGT 9041 |||||| ||| ||||| ||| | || || |||||| | ||||| |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 9042 GGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAA 9101 || |||||||| || || | || | || ||||| |||||||| ||||| ||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 9102 CTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACT 9161 |||||||| || | | || | ||||| || || | || || ||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 9162 TAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCT 9221 ||||| || || ||||||||||| ||||||||| | || || ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 9222 TGACCTTGCGGCT 9234 ||| | || ||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 333 bits (368), Expect = 3e-86 Identities = 440/606 (73%), Gaps = 7/606 (1%) Strand=Plus/Plus Query 8293 TGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGC---TTCATTACC 8349 |||||||| ||| | |||||||| ||| || ||| | | ||| || | || |||| | Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACC-TTATTGAC--TGCAACTTCCGTATTTATTATC 2753501 Query 8350 GCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCT 8409 || ||| | || |||||||| || || || || || || || || || ||| ||| ||| Sbjct 2753502 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCT 2753561 Query 8410 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGC 8469 | || || || ||||| || ||||||||||| || |||| ||| || || | Sbjct 2753562 TTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGA 2753621 Query 8470 CTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGT 8529 | || || ||||| | || ||||| || | | ||||||| ||| | ||||| |||||| Sbjct 2753622 TTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGT 2753681 Query 8530 CCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAA 8589 |||| |||| | ||| | |||||| | ||||| || | |||||||||||||||| Sbjct 2753682 CCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAA 2753741 Query 8590 TGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCT 8649 ||||||||| || | | || |||||||||||||| |||||| || || ||||| Sbjct 2753742 TGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCT 2753801 Query 8650 GTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGAT 8709 ||||| |||||| | ||| | ||| | |||| ||| ||||||||| || ||| || Sbjct 2753802 GTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAAT 2753861 Query 8710 GGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCAC 8769 |||||| || | || ||||| ||||| ||||||| |||| |||| |||||||| ||||| Sbjct 2753862 GGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCAC 2753921 Query 8770 AACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTC 8829 |||||||| | ||| || || ||||| | ||||| |||||||| |||||||| || || Sbjct 2753922 AACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTA 2753980 Query 8830 TTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACC 8889 || || |||||| |||| | || || ||| || | | |||||||| ||||| Sbjct 2753981 TTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGAAACT 2754040 Query 8890 GAGTCT 8895 || ||| Sbjct 2754041 GAATCT 2754046 >seq46 Length=2187656 Score = 304 bits (336), Expect = 1e-77 Identities = 352/473 (74%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 || |||| ||| ||| |||| || | ||| | || || || || || ||| | || || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 ||| ||| | | || || ||||| || |||||||||| || |||| | | | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTAC 8520 || || || | || || ||||| || |||||||| || ||||||||||| ||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 8521 AACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATG 8580 || ||||||||||| |||| | ||| | || ||| | |||| ||| ||||||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTG-TTATATG 1370594 Query 8581 GGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 8640 |||||||| ||||||||| || | | || || |||| ||||||||| ||||||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 8641 TCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCG 8700 || ||||||||||| |||||| ||||||| ||| | | || || | |||||||| Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 ||||||||||||||| || | || ||||| ||||| ||||||| |||| |||| ||| || Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGT 8813 | |||||||||||||| ||||| || || |||||| | ||||| |||||||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq581 Length=5673 Score = 156 bits (172), Expect = 4e-33 Identities = 229/321 (71%), Gaps = 15/321 (5%) Strand=Plus/Plus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATT 8346 |||| ||||| || ||| | |||||||| ||| || ||| |||| || | || ||| Sbjct 5353 TCGGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATT 5411 Query 8347 ACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGA 8406 | ||| ||| | ||||| ||||| || || || || || || || || || ||| |||| Sbjct 5412 ATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 5471 Query 8407 TCTCTCATGTACGGTAACAACATCAT-----CTCTGGTGCAGTTGTTCCCAGCT----CT 8457 ||| | | || || ||||| || || ||||||||| || |||| | || || Sbjct 5472 TCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCT 5531 Query 8458 AACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTC 8517 || || || | ||||| ||||| |||||||| || ||| ||||||||||| | Sbjct 5532 GCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTA 5587 Query 8518 TACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTAT 8577 ||||| || |||||||| |||| | ||| | |||||| | ||||| || | |||| Sbjct 5588 TACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTAT 5647 Query 8578 ATGGGTCGTGAATGGGAACTT 8598 ||||||||||| ||||||||| Sbjct 5648 ATGGGTCGTGAGTGGGAACTT 5668 >seq9200 Length=658 Score = 143 bits (158), Expect = 3e-29 Identities = 220/310 (71%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||| | ||| | ||| ||| | ||||| | || |||| |||||||| ||| | Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 8308 ATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCATTACCGCATTCGTTGCTGC 8363 |||||||| ||| || ||| |||| || || | || |||| ||| ||| | || || Sbjct 413 ATGATCCCTACC-TTATTGACCGCAAC---TTCCGTATTTATTATCGCCTTCATCGCAGC 468 Query 8364 TCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAA 8423 ||||| || || || || || || || || || ||| |||| ||| | | || || || Sbjct 469 CCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAA 528 Query 8424 CAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCC 8483 ||| || ||||||||||| || |||| | ||| || || || | || || ||||| Sbjct 529 CAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCC 588 Query 8484 CATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGT 8543 || |||||||| || ||| ||||||| ||| | ||||| ||||||||||| |||| | Sbjct 589 AATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAAT 648 Query 8544 AGTTTTCCAC 8553 ||| | ||| Sbjct 649 TGTTCTACAC 658 >seq1856 Length=2117 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 8604 CCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTC 8663 ||| || || |||||||||||||| ||||||||| || ||||||||||| |||||| | Sbjct 2 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 61 Query 8664 TGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTA 8713 |||||| ||| | | | ||| |||||||||| || ||||||| || Sbjct 62 TGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516403909584000