Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq53 114 8e-20 seq48 113 3e-19 seq10 113 3e-19 seq47 100 2e-15 seq18 100 2e-15 seq128 87.8 1e-11 seq8 87.8 1e-11 seq71 86.0 4e-11 seq63 86.0 4e-11 >seq53 Length=1972613 Score = 114 bits (126), Expect = 8e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||||||||| |||||| | || ||||| || || |||||||| Sbjct 39815 GCTGTGATTACTGTTCCAGCATATTTCAATGATGCGCAGCGTCAGGCCACAAAAGATGCA 39756 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| ||||| |||| | | ||||||||||||||||| ||||| || || Sbjct 39755 GGCCGCATTGCTGGTCTCGATGTGGAAAGGATTATTAATGAACCAACGGCAGCTGCTCTG 39696 Query 474857 GCTTATGG 474864 ||||||| Sbjct 39695 TCTTATGG 39688 Score = 86.0 bits (94), Expect = 4e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 |||||| ||||||||||| ||||| ||| ||||| ||||| ||||| | | ||| Sbjct 39702 AGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCAATGCGGCCTGCATC 39761 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 | || ||||| || ||||||||||| ||||| || || || ||||| ||||| || Sbjct 39762 TTTTGTGGCCTGACGCTGCGCATCATTGAAATATGCTGGAACAGTAATCACAGCCTT 39818 >seq48 Length=2155392 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | || |||||||||||||| || ||||| ||| | |||||| |||||||| Sbjct 164259 GCAGTGGTCACAGTTCCAGCATATTTCAACGATTCGCAAAGAACAGCAACAAAAGATGCT 164318 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | |||||||| ||||||||||| || || |||| Sbjct 164319 GGCCGTATTGCGGGACTTGAGGTTCTCCGTATTATAAATGAACCAACTGCTGCATCACTG 164378 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || |||||| |||| ||||| Sbjct 164379 GCCTATGGTTTTGAGAAGAA 164398 >seq10 Length=5007788 Score = 113 bits (124), Expect = 3e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||| |||||||||||||| |||||||| ||| | |||||| |||||||| Sbjct 3219296 GCAGTTGTTACAGTTCCAGCATATTTCAATGATTCACAAAGAACAGCAACAAAAGATGCT 3219355 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| || | ||| | |||||||| || |||||||| || || || | Sbjct 3219356 GGCCGTATTGCAGGACTGGAGGTTCTTCGTATTATAAACGAACCAACTGCTGCATCATTG 3219415 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| |||| ||||| Sbjct 3219416 GCTTATGGCTTTGAGAAGAA 3219435 >seq47 Length=2158321 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| | | |||||||| || || ||||| Sbjct 1955114 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCACCGCGTCAAGCCACAAAGGATGCA 1955055 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || || ||||| | | || || ||||||||||||||||| || || Sbjct 1955054 GGTCGGATTGCTGGCCTCGATGTTGAAAGAATCATCAATGAACCAACAGCAGCTGCTCTG 1954995 Query 474857 GCTTATGG 474864 ||||||| Sbjct 1954994 TCTTATGG 1954987 >seq18 Length=3692672 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||||||||||| || ||| |||| |||||||| || || ||||| Sbjct 1978077 GCAGTGGTTACTGTTCCAGCATATTTCAACGATGCTCAGCGTCAAGCCACAAAGGATGCA 1978018 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| | ||| | | || || ||||| ||||||||||| || | Sbjct 1978017 GGCCGCATTGCTGGCCTTGAGGTTGAAAGGATCATCAATGAGCCAACAGCAGCTGCTTTG 1977958 Query 474857 GCTTATGG 474864 ||||||| Sbjct 1977957 TCTTATGG 1977950 >seq128 Length=654355 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| || || || ||||| ||||| | || || || || |||||||| ||| Sbjct 502409 ACAGTTCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATGCGGGTGTGATT 502468 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| ||||| | ||||| || ||||| || || || || || |||| |||||| Sbjct 502469 GCTGGTCTGAATGTCCTCCGTATCATCAATGAGCCCACTGCTGCTGCTATTGCCTATGGT 502528 Query 474866 CTTGATAAGAA 474876 ||||| ||||| Sbjct 502529 CTTGACAAGAA 502539 >seq8 Length=5380884 Score = 87.8 bits (96), Expect = 1e-11 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| |||||||| ||||| || ||||||||||||| ||||| |||||| | Sbjct 1717777 CAAG-TGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATCTTCCA 1717835 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||| ||||||||||| || | ||| || || || ||||| || |||||||| |||| Sbjct 1717836 ATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAA 1717895 >seq71 Length=1586662 Score = 86.0 bits (94), Expect = 4e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 321789 GCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAAC 321847 |||||| | | |||| ||| | |||| || || |||||||||||| | |||||||| Sbjct 1114447 GCAATACTCCACGGTACACCTAACTCAT-CAATGTTAATATTTGGATCTGGGGTGATAAC 1114505 Query 321848 TGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 ||| || | || | ||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 1114506 TGTGCGGGCTGAGAAATCAACACGCTTGCCCATCAAGTTCCCTCTAATACGGCCTTCTTT 1114565 Query 321908 T 321908 | Sbjct 1114566 T 1114566 >seq63 Length=1736770 Score = 86.0 bits (94), Expect = 4e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 321789 GCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAAC 321847 |||||| | |||||| || | ||||| || || |||||||||||| | ||||||||| Sbjct 1022110 GCAATACTCCATGGTACTCCCAATTCAT-CAATGTTAATATTTGGATCTGGTGTGATAAC 1022052 Query 321848 TGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTT 321907 || || | || | ||||||||| || ||||| | || ||||||||| | |||||||| Sbjct 1022051 CGTTCGGGCTGAGAAATCAACACGCTTGCCCATCAAGTTCCCTCTAATAAGGCCTTCTTT 1021992 Query 321908 T 321908 | Sbjct 1021991 T 1021991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267673641274328