Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq7681 356 7e-94 seq21 260 4e-65 seq46 230 7e-56 seq9200 161 3e-35 seq581 159 1e-34 >seq7681 Length=829 Score = 356 bits (394), Expect = 7e-94 Identities = 456/617 (74%), Gaps = 16/617 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 610 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 551 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 550 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 493 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || || |||||||| || || | || || Sbjct 492 -GATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 434 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 433 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 374 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || || ||||| || ||||| ||||| Sbjct 373 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 314 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||||| || || | || ||| ||| ||||| ||||| Sbjct 313 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 254 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 253 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 197 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| ||||| || || || Sbjct 196 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 137 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | ||||||||||||||||||||| Sbjct 136 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACT 77 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| ||| |||| | ||||| || | || | |||||||| || || || ||| Sbjct 76 TCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAA 19 Query 18426 TAAGCAACACAAATCCA 18442 || |||||| |||||| Sbjct 18 TATGCAACAGCAATCCA 2 >seq21 Length=3603864 Score = 260 bits (288), Expect = 4e-65 Identities = 401/566 (71%), Gaps = 7/566 (1%) Strand=Plus/Minus Query 18222 TGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||||| ||||| | || |||||||| || || ||||| | || || || ||| Sbjct 2753994 TGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2753936 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATA 18341 ||| ||||||| ||||| | || |||||||| | ||| || ||||||||||| || Sbjct 2753935 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 2753876 Query 18342 CCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAA-TA-CT 18398 || | || |||||||| ||| ||||| ||||| ||| ||| || | | ||||| || || Sbjct 2753875 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCT 2753816 Query 18399 GAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGT 18458 | |||||||| || || | ||||| |||||| |||||| || |||||||| | Sbjct 2753815 GTA---GCAGCTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAA 2753759 Query 18459 CTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAAC 18518 | ||||||||||||||| || ||||| ||| || | || | | ||||| | Sbjct 2753758 CATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 2753699 Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| || | | | || || || || |||||||| || || | ||| ||||| || Sbjct 2753698 ACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAA 2753639 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 | |||||| || || | | ||| || ||| | || | || || || || || || Sbjct 2753638 AGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATA 2753579 Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||||||||||| | ||| | || | |||||||||||||||||||| || || || ||| Sbjct 2753578 TTGTTTCCATAAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGA 2753519 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 ||||| || | || || || | |||| | | || ||| || || | | ||||||||| Sbjct 2753518 GGAGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATC 2753459 Query 18759 AGTACCCCAAACCACCCCACGTAGAG 18784 | || |||||||| | || ||| || Sbjct 2753458 AAAACACCAAACCATCGCATGTAAAG 2753433 >seq46 Length=2187656 Score = 230 bits (254), Expect = 7e-56 Identities = 341/477 (71%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || |||||||||||||| ||||| || | | ||| Sbjct 1370360 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 1370419 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || ||||||||||| || || | || |||||||||||||||||| || Sbjct 1370420 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 1370479 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| || | || |||| | ||||| || | || | |||||||| || || || ||||| Sbjct 1370480 TTGACCGATAGCGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 1370537 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| || ||||||| || | || |||||||||| | || ||||| Sbjct 1370538 GCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATA 1370597 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| || | | | || || || | ||||| || | ||| || || || || ||| Sbjct 1370598 TAACAAGCTACACAAGTAAG-AACTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 1370656 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || || | |||||||||||| |||||||| || || | ||||| || | Sbjct 1370657 AACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCA 1370716 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 | | || | || | || || || || ||||||||||| ||||| | || | | | Sbjct 1370717 CAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATA 1370776 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 |||| ||||||||||| || || | ||| | || |||| || || || | |||| Sbjct 1370777 GGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAAT 1370833 >seq9200 Length=658 Score = 161 bits (178), Expect = 3e-35 Identities = 211/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 18519 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 18578 ||||| || | ||| || || || || |||||||| || || | | |||||||||||| Sbjct 651 ACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAA 592 Query 18579 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATG 18638 |||||||| || || | ||||| || ||| | || | || || || || || || Sbjct 591 ATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 532 Query 18639 TTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGA 18698 ||||||||||| ||||| | || || |||||||||||||||||||| || || || ||| Sbjct 531 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 472 Query 18699 GGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATA 18758 || || || | || || || | |||| | | || |||||| || | | ||||||||| Sbjct 471 GGGGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATC 412 Query 18759 AGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 | || |||||||| || | ||| || || || | || || || | ||||| Sbjct 411 AAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGT 360 >seq581 Length=5673 Score = 159 bits (176), Expect = 1e-34 Identities = 250/357 (70%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522 ||||||||||||| | || ||||| ||| || | || | | ||||| | |||| Sbjct 5672 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 5613 Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582 | || | ||| || || || || ||||||||||| || | | ||||||||||||| Sbjct 5612 TTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG---- 5557 Query 18583 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT----GCCCCTGA-----TA 18633 |||| ||||| | ||||| || ||| | || | || | || || || || Sbjct 5556 GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATA 5497 Query 18634 TGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAA 18693 | || ||||||||||| ||||| | || || |||||||||||||||||||| || || | Sbjct 5496 TAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTA 5437 Query 18694 CGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGA 18753 | ||||| ||||| | || || || | |||| | | || |||||| || | | ||||| Sbjct 5436 CTGGAGGGGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA 5377 Query 18754 TCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 |||| | || || ||||| || | ||| || ||||| | || || || | ||||| Sbjct 5376 TCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 5320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151297221665884