Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1065 580 1e-160 seq7681 376 3e-99 seq21 262 5e-65 seq46 201 1e-46 seq9200 145 1e-29 seq581 145 1e-29 seq1856 84.2 3e-11 >seq1065 Length=3091 Score = 580 bits (642), Expect = 1e-160 Identities = 741/1017 (73%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 1428 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 1487 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || ||||| || || |||||||| ||| Sbjct 1488 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGGATATTTTTGGTGTAGAAAGTC 1547 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 1548 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 1607 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| || |||| | || || | ||| |||| | ||| | || || ||||| Sbjct 1608 TTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 1667 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 1668 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 1727 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || ||||||||||||||||| |||||| |||| || | | || ||| | Sbjct 1728 AAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAAGCTCGG 1787 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || || || |||||||||||| | |||||||| || ||||| | || || || Sbjct 1788 AAGGTATTCGCACCATCACCATCTTCGAATAGAGTGTTTTCTACAGTAGCCCCATGAATA 1847 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || | | || ||||| ||||||||||| || ||||| | | Sbjct 1848 GCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAAGGGGTTCAAC 1907 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||| || | ||||| |||||| ||||| || ||||| Sbjct 1908 GTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGCTACGCCAAAA 1967 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| || || || || ||||| || || || || |||||| Sbjct 1968 CTCGGTGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACGGAAACAAAA 2027 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 || ||||| || |||||||| | ||| ||||| || || | | | || ||| ||| Sbjct 2028 ACCGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCTCAATTGAACAGACCGAGCA 2087 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || ||||| || || |||||||| |||||| Sbjct 2088 AGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAAA 2147 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||| ||||| ||||| || ||||| Sbjct 2148 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCTGGTCCCCAT 2207 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 ||||| | | ||| || | | | | |||||| || || || || || || | |||| Sbjct 2208 AGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACCGCCGCCGTTAAGAAA 2267 Query 102550 TTAGCA-CCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605 || ||| ||||| | | ||||| || | || ||||||||||| ||||| |||| Sbjct 2268 TT-GCAGCCTTCTAAATAGGAACTA---GCCAATCCATGGGTATACCAAGAAGTTACAAA 2323 Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCC 102665 || || || |||| ||| ||||| | |||| ||||||| ||||| || | ||| || Sbjct 2324 AGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCC 2383 Query 102666 AGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||| || ||||| || || || |||| | | |||||| |||| || ||||| Sbjct 2384 AGACCATCCTACAAAAACGAAACGGTCTCTTCGTAACCAGTCGTCCATAATATCAAA 2440 >seq7681 Length=829 Score = 376 bits (416), Expect = 3e-99 Identities = 447/613 (73%), Gaps = 2/613 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| | ||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| || | ||||| | Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 494 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || |||||||| ||||| || |||| ||| | || || Sbjct 493 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 434 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||||||| || ||||| || | |||||||| Sbjct 433 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 374 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || ||||||||||| || ||||| || ||||| ||||| || || ||||| || Sbjct 373 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 314 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || |||||||| | || ||||||| ||||||| || || Sbjct 313 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 254 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | || || |||| ||||| |||||||||||||| || ||||| |||| Sbjct 253 CCTGATCAAACTAGAGGTTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCCGA 195 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | |||||| || || ||||| || ||||| || || || |||| Sbjct 194 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGA 135 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | ||| ||||||| || || || || || ||||||||| |||| ||||| | Sbjct 134 ATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTC 75 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| ||||| | |||||| || || | ||||| ||||||||||| || |||| Sbjct 74 CTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATG 15 Query 103770 CGACACAGATCCA 103782 | ||| ||||| Sbjct 14 CAACAGCAATCCA 2 >seq21 Length=3603864 Score = 262 bits (290), Expect = 5e-65 Identities = 423/604 (70%), Gaps = 3/604 (0%) Strand=Plus/Minus Query 103510 AGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAG 103568 ||||||||||||||| ||||| | || | | | || || |||| |||| ||||||| Sbjct 2754046 AGATTCAGTTTCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAG-GAACTATGCATAG 2753988 Query 103569 CACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGA 103628 ||||||| || ||||| ||||| || ||||| || || | ||||| || || ||| | | Sbjct 2753987 CACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAA 2753929 Query 103629 GAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAG 103688 | ||||| || | || ||||| || | ||| ||||||| || || || || || |||| Sbjct 2753928 GGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAG 2753869 Query 103689 GCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAG 103748 |||| ||| || || ||||||||| ||||||| |||||| | || | |||| Sbjct 2753868 CCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAG 2753809 Query 103749 CCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACA 103808 | |||||||||| || || || ||| ||||| || ||||| |||| || | | Sbjct 2753808 CTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAA 2753749 Query 103809 ATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTT 103868 |||||| ||||| |||||||| | | |||| | |||||| | || | || | Sbjct 2753748 GTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCT 2753689 Query 103869 GGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGA 103928 |||||||||| || || | ||| ||||||| | |||| ||||| |||| || || | Sbjct 2753688 CACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAA 2753629 Query 103929 AGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGT 103988 | || | | || || || | |||| || ||||||||||| || ||||| || | Sbjct 2753628 AATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCAT 2753569 Query 103989 ACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTA 104048 | || | |||||| || || |||||||| || || ||||| || ||||| ||||| | Sbjct 2753568 AAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGA 2753509 Query 104049 CGAAAGCAACGATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGA 104108 ||| || | || || | ||||| | ||| | || |||||||||| ||||| | Sbjct 2753508 TGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAA 2753449 Query 104109 ACCA 104112 |||| Sbjct 2753448 ACCA 2753445 >seq46 Length=2187656 Score = 201 bits (222), Expect = 1e-46 Identities = 326/465 (70%), Gaps = 3/465 (1%) Strand=Plus/Plus Query 103592 ACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAG 103651 || ||||| || || | |||||| || || ||||| || ||||| || || | | ||| Sbjct 1370361 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAAT 1370420 Query 103652 ACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCT 103711 || | ||| ||||||| || || || || || |||| |||| |||| ||||| ||| Sbjct 1370421 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCT 1370480 Query 103712 TGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCG 103771 ||||| | | ||| | |||||| || || | ||||| ||||||||||| || ||||| Sbjct 1370481 TGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 1370540 Query 103772 ACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATAT 103831 ||| ||||| || |||| ||||||| | | | |||||||||||| |||||||| Sbjct 1370541 ACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATA- 1370599 Query 103832 GCATAGATGC-CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAG 103890 || || | | ||| | ||| || | || | || | |||||||||| || || | Sbjct 1370600 ACA-AGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 1370658 Query 103891 CCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGA 103950 ||| |||||||||||||| ||||||||||| || || || || | || || || | Sbjct 1370659 CCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACA 1370718 Query 103951 GGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGG 104010 | |||| || |||||||||| || ||||| || || | | |||||| | || Sbjct 1370719 AGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGG 1370778 Query 104011 TTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGC 104055 | ||||| || || ||||| | ||| | ||||| | ||| || Sbjct 1370779 CTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGC 1370823 >seq9200 Length=658 Score = 145 bits (160), Expect = 1e-29 Identities = 216/305 (71%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 103872 AAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGT 103931 |||||||||| || || | ||| ||||||| |||||| ||||||||||| || || || | Sbjct 638 AAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAAT 579 Query 103932 GAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACA 103991 | | || || || || | |||| || ||||||||||| || ||||| || || | Sbjct 578 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 519 Query 103992 TGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGA 104051 | ||||||| || || |||||||| || || ||||| || ||||| ||||| | || Sbjct 518 GTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCGATGA 459 Query 104052 AAGCAACGATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACC 104111 | || | || || | ||||| | ||| | || |||||||||| ||||| |||| Sbjct 458 AGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC 399 Query 104112 AACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGG 104171 | || | || ||||| || | || || | ||| | ||||||| | ||||| ||| Sbjct 398 ATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCAC-AGG 340 Query 104172 ATTGT 104176 |||| Sbjct 339 CTTGT 335 >seq581 Length=5673 Score = 145 bits (160), Expect = 1e-29 Identities = 261/377 (69%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 103810 TTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTG 103869 |||||||||||| |||||||| | | |||| | |||||| | || | || | Sbjct 5665 TTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTC 5606 Query 103870 GAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAA 103929 ||||||| || || || | ||||||||||| |||||| |||||||| || || || Sbjct 5605 ATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAA 5550 Query 103930 GTGAAGACCAATTGC----GTTGGAGGAGGGAACAACTGCACCAGAGATGATGT-----T 103980 ||| | || || || | | ||| |||| || ||||||||||| || | | Sbjct 5549 GTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATT 5490 Query 103981 GTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGG 104040 ||| || || | | ||||||| || || |||||||| || || ||||| || ||||| Sbjct 5489 GTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGG 5430 Query 104041 TGCTGCTACGAAAGCAACGATGAAG-CAGATGGTTGCCGCCAACAGAGTTGGGATCATCA 104099 || || | |||||| | || || |||| | |||| | ||| | || |||||||||| Sbjct 5429 GGCAGCGATGAAAGCGATAATAAATACAGAAG-TTGCGGTCAATAAGGTAGGGATCATCA 5371 Query 104100 GCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAAGT 104159 ||||||||||| || | || |||||||| | || || | ||| | ||||||| Sbjct 5370 AAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGC 5311 Query 104160 TATCCCACGAGGATTGT 104176 | ||||| ||| |||| Sbjct 5310 GACCCCAC-AGGCTTGT 5295 >seq1856 Length=2117 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 103685 AAAGGCA-TAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGA 103743 |||||| ||||||| || || |||||||||| |||| | |||||| || || | Sbjct 119 AAAGGCTGTAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGT 60 Query 103744 CGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGG 103801 ||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| Sbjct 59 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633420267608880