Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq7681 376 7e-100 seq46 210 6e-50 seq21 205 3e-48 seq581 120 9e-23 seq9200 118 3e-22 >seq7681 Length=829 Score = 376 bits (416), Expect = 7e-100 Identities = 445/603 (74%), Gaps = 0/603 (0%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||||||||| || || || || ||||| || || | ||||| || ||||| Sbjct 604 GTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACG 545 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||| | || |||||||| || || || || | || | | | | | ||||||||| Sbjct 544 GTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTT 485 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || ||||||||||| | |||||| ||||| ||| | || | |||| ||||| || Sbjct 484 GAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGAT 425 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 ||||| |||||||| ||||| | ||||| || | | ||| || || || || ||||| Sbjct 424 CCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGC 365 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | ||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 364 ATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGTCTCTTC 305 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 |||||||||||| |||||||| | || || | | |||||| || || | || | Sbjct 304 CTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTGATCAA 245 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || |||| | ||| ||||||||| ||| | || || ||||| || || Sbjct 244 ACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGC 185 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 ||||| | ||||||||| ||||||||||| || |||||||| |||||||| || | ||| Sbjct 184 TACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCAT 125 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 ||||||| || || || || || || |||||| ||||||| ||| || || |||| Sbjct 124 AAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAAT 65 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || |||| | ||| |||||||| ||||| || |||||||| || || |||||| || Sbjct 64 AGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAAT 5 Query 22076 CCA 22078 ||| Sbjct 4 CCA 2 >seq46 Length=2187656 Score = 210 bits (232), Expect = 6e-50 Identities = 336/481 (70%), Gaps = 1/481 (0%) Strand=Plus/Plus Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 ||||| ||| || || ||||| | ||||||||| ||||||||||| || |||||||| Sbjct 1370353 CACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTA 1370412 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||| ||| || | ||| ||||||| || || || || || || | |||| ||||||| | Sbjct 1370413 CCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGA 1370472 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || || | | |||| | ||| |||||||| ||||| || |||||||| | Sbjct 1370473 AACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 1370532 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || ||| || || | | ||||||||||||| || | Sbjct 1370533 AATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGAC 1370592 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| ||| ||| | ||| || | || | || | | ||||| || | Sbjct 1370593 CCATATAA-CAAGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCAT 1370651 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| | |||||||||||| | |||||||||||||||||||| || || | |||||| | Sbjct 1370652 TGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCG 1370711 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | || | |||| | | | || || || || ||||| ||||| | | || ||| Sbjct 1370712 CCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAA 1370771 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 | || | || || ||||| || || | || | || ||| ||||||||||||| Sbjct 1370772 AAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAA 1370831 Query 22360 A 22360 | Sbjct 1370832 A 1370832 >seq21 Length=3603864 Score = 205 bits (226), Expect = 3e-48 Identities = 402/588 (68%), Gaps = 11/588 (2%) Strand=Plus/Minus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACA--AACTCCCACCAAATACGCCGGCCA 21897 || || |||| | || ||||||||| ||| | ||| | || ||||| || || | Sbjct 2754012 GAGGTTACCAAGGAACTATGCATAGCACTGAATAGGAAC---CGCCGAATACACCAGCTA 2753956 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGT 21957 |||| | |||||||| |||||| |||| || ||||||| |||||||| || | ||| Sbjct 2753955 CACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAA 2753896 Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 ||||||| || || || || || || | |||| ||| ||||||| || || ||| | Sbjct 2753895 AGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAG 2753836 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 | || | | ||| | ||| || ||||| || ||||||| || || ||||||| |||| Sbjct 2753835 GGTAGATCAAGAAAATAGCTGTAGCAGCTGCAACAGGAGTTGAATAGGCAACAACAATCC 2753776 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGC 22137 | || | ||| || | | | ||||||||||| || || ||||| ||| | || | Sbjct 2753775 AAGGACGCATACCCAAACATCAACTAAGTTCCCATTCACGACCCATATAACAAGCTACAC 2753716 Query 22138 CAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 ||| | |||||| | || | || | | ||||| || ||||| | ||||||||||| Sbjct 2753715 CAAGTAAGAAGTGTAGAACAATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAA 2753656 Query 22198 GTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGA 22257 || ||||| |||| |||||| || || | || ||| || | |||| | Sbjct 2753655 CAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAA 2753596 Query 22258 CGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTC 22317 ||| || || || || ||||| ||||| | | || ||| || || || || || | Sbjct 2753595 TGGCACCAGAGATAATATTGTTTCCATAAATTAAAGAACCAAAAACAGGCTCACGAATAC 2753536 Query 22318 CATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA-AC--AAGTTGTAGCGG 22374 |||| || || || || || || | | |||||||||||||| || |||||| | | Sbjct 2753535 CATCAATATCTACTGGAGGAGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCA--GT 2753478 Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGAC 22422 ||| ||| | || ||||| | || || ||||||| | ||||||| Sbjct 2753477 CAATAAGGTA-GGGATCATCAAAACACCAAACCATCGCATGTAAAGAC 2753431 >seq581 Length=5673 Score = 120 bits (132), Expect = 9e-23 Identities = 231/336 (69%), Gaps = 15/336 (4%) Strand=Plus/Minus Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160 |||||||||||||| || ||||| ||| | || |||| | |||||| | || | Sbjct 5670 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 5611 Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 || | | |||||||| ||||| | ||| ||||||| | ||||||||||| ||| Sbjct 5610 AGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGG 5555 Query 22221 TAGAAGTGTAGTCCGAT---GGCATTACT-GCTCGGAACGACGGCTCC-----TGATATG 22271 || ||||| | |||||| ||| | | | | |||| | ||| || | |||| Sbjct 5554 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATA 5495 Query 22272 ATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACA 22331 || ||||| ||||| | | || |||| || || || || || ||||| || || || Sbjct 5494 ATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACT 5435 Query 22332 GGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAAT 22390 || || || | | || ||||||||||| || || |||| ||| ||| | || || Sbjct 5434 GGAGGGGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-GGGAT 5376 Query 22391 CATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||| | || ||||||||||| | ||||||||||| Sbjct 5375 CATCAAAACACCGAACCATCCGATGTAAAGACGGTT 5340 >seq9200 Length=658 Score = 118 bits (130), Expect = 3e-22 Identities = 186/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 ||||| || ||||| | ||||||||||| | |||||||||||||||||||| || || Sbjct 636 GGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAATGC 577 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | |||||| || | | |||| | ||| || || || || ||||| ||||| | Sbjct 576 AATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGT 517 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 | || |||| || || || || || ||||| || || || || || || | | ||| Sbjct 516 AAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAG 457 Query 22350 GCGATAATAAA-AC--AAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAA 22405 ||||||||||| || ||||| |||| ||| ||| | || ||||| | || || || Sbjct 456 GCGATAATAAATACGGAAGTT---GCGGTCAATAAGGTA-GGGATCATCAAAACACCAAA 401 Query 22406 CCATCCTACATAAAGACGGTT 22426 |||||| | |||||||| || Sbjct 400 CCATCCGATGTAAAGACGATT 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146187536911080