Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq49 95.1 6e-15 seq4 95.1 6e-15 >seq49 Length=2122476 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| || || | ||||| ||||||||||| | Sbjct 612173 TACCCTTTCTTTTGCCGCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 612232 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 612233 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTC 612292 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||| | || ||||||||| ||||| |||| || | ||||| || Sbjct 612293 GAATATTGTGAACTGAAACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 612352 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 612353 TCAGGGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 612392 >seq4 Length=6248241 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| |||||||| || ||||||||||| ||||| | ||||| ||||||||||| | Sbjct 1174922 TACCCTTTCTTTTGCCGCCACCTTGATCAACGTAACGAGCAGTATCATTGAAAACACGTA 1174863 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| ||||| | ||| | ||| ||| ||||| | |||| | || || | || Sbjct 1174862 ACATAGGAACAATCCCATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTC 1174803 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||||| |||| | || ||| ||||| ||||| |||| || | ||||| || Sbjct 1174802 GAATATTGTGAACTGAAACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCT 1174743 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||||| | ||||| | ||||| ||| ||||||| Sbjct 1174742 TCAGAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 1174703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253003652859950