Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1065 381 7e-101 seq7681 363 2e-95 seq21 259 6e-64 seq46 237 2e-57 seq9200 158 1e-33 seq1856 89.7 6e-13 seq11 86.0 7e-12 >seq1065 Length=3091 Score = 381 bits (422), Expect = 7e-101 Identities = 707/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 1424 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 1483 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | ||| || || || || ||||| Sbjct 1484 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGGATATTTTTGGTGTAGAA 1543 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 1544 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 1603 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || || || || | || |||| |||| | ||| |||| || || Sbjct 1604 TAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTAC 1663 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 1664 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 1723 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || |||| ||| |||||||||||| | || || || | || || Sbjct 1724 CCAAAAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAAGC 1783 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 || ||| || | || ||| ||| || || || ||| | ||| Sbjct 1784 TCGGAAGGT---------ATTCGCACCATCACCATCTTC-GA---------ATAGAGTGT 1824 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 |||| || || || |||||||| || ||||| | || | |||| || ||| ||||| Sbjct 1825 TTTCTACA--GTAGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAAC 1882 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || ||||| || || || || ||||| | ||| | ||| | Sbjct 1883 TCCCATCATATGAAAGGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAA 1942 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || ||||| |||||||||| || || ||||| Sbjct 1943 TCGAAATATAGCTGCTACGCCAAAACTCGGTGCAAAGAACCAACCAGATTGCCCCAGTGG 2002 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | | || || ||||| | ||||||||| | ||| || || Sbjct 2003 ATAAATAAGGAATACGGAAACAAAAACCGCGATTGGACCAGAGAATGAAATTGCATTATA 2062 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| || | ||| | || | |||||||| | | |||||||||||| ||| | Sbjct 2063 AGGCCTCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGC 2122 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 2123 AAAAGCCCCATGGAGAGCGACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAA 2182 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||| |||||||| || | || | | || | | | | |||| Sbjct 2183 ATCCCCTTGTGCTTCTGGTCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGG 2242 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 ||||| || || || |||||||| || || || | ||| ||| || | ||||| Sbjct 2243 GGTGGAAACCGCCGCCGTTAAGAAATTGCAGCCTTCTAAATAGGAACTAGCCAATCCATG 2302 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 |||||||| || || || || ||||| ||| |||||||| || | | | ||| || Sbjct 2303 GGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGC 2362 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || || ||||||||||||| || || ||||| ||||| |||||| Sbjct 2363 ACAAGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCTCTTCGTAACCA 2422 Query 123886 GTCGTCAAGAACATCAAA 123903 |||||| | || |||||| Sbjct 2423 GTCGTCCATAATATCAAA 2440 >seq7681 Length=829 Score = 363 bits (402), Expect = 2e-95 Identities = 448/610 (73%), Gaps = 2/610 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| |||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 609 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 550 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | | |||| |||| || | | || || || |||||| || || Sbjct 549 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTACAGA 491 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| || ||||||||||| | |||||||||||| || | ||||| | || || || Sbjct 490 TTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAA 431 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | | ||| ||||| || | || | ||||||||| | | | ||||||||||| Sbjct 430 CCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAA 371 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 |||||| |||||||| | |||||||| |||||||| || || || ||||| || || Sbjct 370 ACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 311 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||| ||||| || || || ||||| | || || || | || || ||||| || Sbjct 310 CTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCT 251 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 ||| | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 250 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 191 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || ||||| ||| |||||| || |||||||| || ||||| |||||||| ||||| || Sbjct 190 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATAC 131 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 | |||||||||||||||||| ||||| || | ||||||||||||||||| || || Sbjct 130 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 71 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 ||||| ||||| | ||||| ||||| ||||| | || || |||||||| ||||| Sbjct 70 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 11 Query 124648 ACAGATCCAA 124657 | |||||| Sbjct 10 AGCAATCCAA 1 >seq21 Length=3603864 Score = 259 bits (286), Expect = 6e-64 Identities = 414/593 (70%), Gaps = 1/593 (0%) Strand=Plus/Minus Query 124394 TCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAA 124453 || || || || ||||| | | ||| || || | |||| |||||| || ||||| Sbjct 2754036 TCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGAATAG- 2753978 Query 124454 GATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGC 124513 || || ||||| | || ||||| ||| ||||| || |||||| | || ||||| ||| Sbjct 2753977 GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTGC 2753918 Query 124514 TCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCA 124573 | ||| ||||| || | |||||||||||||||||| ||||| || | | |||||||| | Sbjct 2753917 TGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATTA 2753858 Query 124574 GAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGT 124633 || || || |||||| ||||| | ||||| | ||| ||||| | || || Sbjct 2753857 GAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCTGCAACAGGA 2753798 Query 124634 GCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGT 124693 | |||||| |||||| |||||||||||||| || || | | |||||||| | Sbjct 2753797 GTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAAGTTCCCATTCA 2753738 Query 124694 CTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCA 124753 | ||||| || | | ||||| | |||||| | || | | || | |||||||| Sbjct 2753737 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAGGACCA 2753678 Query 124754 CCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCG 124813 ||||| || ||||||||||||||| ||| ||||| || | |||||| || || | || | Sbjct 2753677 CCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAATCTG 2753618 Query 124814 ATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAA 124873 || || || | |||| || ||||||||||| || ||||| ||||| | |||||| Sbjct 2753617 ATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAATTAAAGAA 2753558 Query 124874 CCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACG 124933 || || || || | || || || ||||| || ||||| ||||| || || || | Sbjct 2753557 CCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAGGCGATA 2753498 Query 124934 ATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCA 124986 || || | | ||| || | |||| || ||||| | |||||||||||| Sbjct 2753497 ATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 2753445 >seq46 Length=2187656 Score = 237 bits (262), Expect = 2e-57 Identities = 330/461 (72%), Gaps = 1/461 (0%) Strand=Plus/Plus Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || |||||||| || ||||| |||||| | | ||| || Sbjct 1370364 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATACA 1370423 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | |||||||||||||||||| ||||| || | | ||||||||||||||| || ||| Sbjct 1370424 ATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCTTGA 1370483 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | | ||| | ||||| ||||| ||||| | || || |||||||| |||||| Sbjct 1370484 CCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1370543 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 ||||||||| |||| || | | | | |||||||||| | ||||| || Sbjct 1370544 GCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACAA 1370603 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | || | ||| ||| || | || | | || ||||||||||||||| || |||||| Sbjct 1370604 GCTACACAAGTAA-GAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAT 1370662 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 ||||||| || ||| |||||||| |||||||| || || | |||||| || | | | Sbjct 1370663 TCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACAAGTT 1370722 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||||| || ||||| ||||| | |||||||| | || | Sbjct 1370723 GGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTTG 1370782 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGC 124929 | || || || ||||| | ||| | |||||||| || || Sbjct 1370783 CGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGC 1370823 >seq9200 Length=658 Score = 158 bits (174), Expect = 1e-33 Identities = 189/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 124741 CTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTA 124800 || ||||||||||||||| || |||||||||||||||| ||| |||||||| |||||||| Sbjct 643 CTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTA 584 Query 124801 GAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACC 124860 || || | |||||| || || | |||| || ||||||||||| || ||||| || Sbjct 583 AAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 524 Query 124861 ATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGC 124920 ||| | |||||||| | || || || | || || || ||||| || ||||| ||||| Sbjct 523 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGC 464 Query 124921 AATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACC 124980 || || || | || || | | ||| || | |||| || ||||| | |||||| Sbjct 463 GATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACC 404 Query 124981 AAACCAACCAACATAAA 124997 |||||| || | |||| Sbjct 403 AAACCATCCGATGTAAA 387 >seq1856 Length=2117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCA----CCG 123811 |||| ||||| |||||||| || || || || ||||| ||| ||||||||| || Sbjct 1039 CAAT-CCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCAACCCCCT 1097 Query 123812 ATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGA 123871 | | | ||| |||||||| | || || || || ||||||||||| || || ||||| Sbjct 1098 AAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCGGACCATCCTATAAAAACGAAACGG 1157 Query 123872 TCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 || || |||||||||||| | || |||||| Sbjct 1158 TCCCTTCGTAACCAGTCGTCCATAATATCAAA 1189 >seq11 Length=4958479 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | |||||||| || || ||||||||||| || |||||||| || Sbjct 788958 ACACCAATAGGGCCCATTCCAGGACCACCTCCGCCATGTGGAATGCAAAATGTCTTGTGC 788899 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || ||||| || |||||||| ||| | || ||| ||| || || |||||| Sbjct 788898 AGGTTAAGATGGCAAACATCTGCTCCAATGAAACCTGGGCTTGTTAACCCAACCTGT 788842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578913099060720