Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1065 531 7e-146 seq7681 401 8e-107 seq21 307 1e-78 seq46 284 2e-71 seq9200 165 1e-35 seq581 154 2e-32 seq4 87.8 2e-12 >seq1065 Length=3091 Score = 531 bits (588), Expect = 7e-146 Identities = 739/1026 (72%), Gaps = 16/1026 (2%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 1423 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 1479 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | |||||||| |||| Sbjct 1480 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGGATATTTTTGGTGT 1539 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | |||||| || ||||| || || || || || ||||| | Sbjct 1540 AGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGG 1599 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| || || ||||| || |||| | |||||||| | | ||| | ||| |||| | Sbjct 1600 CACGTAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGG 1659 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| | ||||||||| || |||||||| |||||| ||| ||||| || ||||||| Sbjct 1660 GTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTT 1719 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | |||||||| || || || |||||||| ||||| || || ||| | ||||| | | | Sbjct 1720 GGGACCAAAAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAA 1779 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTC--ATACAGTGTATTCTCGACAGTAAC 23800 | ||| || || || || || |||||||| ||| ||||| |||| |||||| | Sbjct 1780 AAGCTCGGAAGGTATTCGCACCATCACCATCTTCGAATAGAGTGTTTTCT--ACAGTAGC 1837 Query 23801 TCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAA 23860 ||||||||||| | || || || | || | || || ||||||||||||||||| || Sbjct 1838 CCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAA 1897 Query 23861 GGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGC 23920 |||||| | |||||| |||||||| || |||| ||| || | ||| | || || || || Sbjct 1898 GGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGC 1957 Query 23921 AACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATAC 23980 || || |||||||| |||||||||||| || || |||| ||||| || |||||||| Sbjct 1958 TACGCCAAAACTCGGTGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATAC 2017 Query 23981 AGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAAT 24040 || || || || || || |||||||| || | ||| ||||| || || | | | || Sbjct 2018 GGAAACAAAAACCGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCTCAATTGAA- 2076 Query 24041 TAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGA 24099 ||| || || |||||||| ||||||||||| |||||||| |||||||| || || |||| Sbjct 2077 CAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGA 2136 Query 24100 GAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACT 24159 |||| ||||| | ||| || || || | ||| ||| || ||| |||||||| | | Sbjct 2137 GAGCGACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTT 2196 Query 24160 CAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTG 24219 | || ||||| ||||| | | ||| || | | | | |||||| || || || || | Sbjct 2197 CTGGTCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACCGCCG 2256 Query 24220 CCG-TAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACT 24277 ||| ||||||| | ||| || || | |||||||||||| | ||||||||| |||||| Sbjct 2257 CCGTTAAGAAA--TTGCAGCCTTCTAAATAGGAACTAGCCAATCCATGGGTATACCAAGA 2314 Query 24278 CGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAG 24337 || ||||||| || || |||| |||||| || | || | ||||||| |||| || Sbjct 2315 AGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAG 2374 Query 24338 TAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGAT 24397 | || |||||||| || ||||| || || || || | | | ||||||||||| || Sbjct 2375 CAATAGGCCAGACCATCCTACAAAAACGAAACGGTCTCTTCGTAACCAGTCGTCCATAAT 2434 Query 24398 GTCAAA 24403 ||||| Sbjct 2435 ATCAAA 2440 >seq7681 Length=829 Score = 401 bits (444), Expect = 8e-107 Identities = 456/612 (75%), Gaps = 0/612 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| | || | || || || || || || | |||||| || || || | ||||| Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 494 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| |||||||| || || ||||| ||||| || | ||| | || || Sbjct 493 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 434 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 ||||||||| || || || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 433 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 374 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| ||||||||||||||| || ||||| || || || || || || || ||||| || Sbjct 373 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 314 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || || ||||| | || || ||| ||||||| || || Sbjct 313 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 254 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 253 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 194 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || || ||||||||||| ||||| ||||||||||| Sbjct 193 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 134 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| ||| |||| |||||||||||||| || | ||||||| |||| |||||| || Sbjct 133 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCC 74 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||| | ||| || | | ||| || ||| | ||||| || || ||||| |||||||| Sbjct 73 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 14 Query 27330 TACACAGATCCA 27341 ||| ||||| Sbjct 13 AACAGCAATCCA 2 >seq21 Length=3603864 Score = 307 bits (340), Expect = 1e-78 Identities = 430/602 (71%), Gaps = 1/602 (0%) Strand=Plus/Minus Query 27070 GACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCA 27129 || ||||||||||| ||||| | || | ||| || |||| | ||||||||| Sbjct 2754045 GATTCAGTTTCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 2753986 Query 27130 GAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGG 27189 ||| || || || |||||||| ||||| ||||| | ||||| || || ||| ||||| Sbjct 2753985 CTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 2753927 Query 27190 ATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGC 27249 || ||||| | |||||||||||||| ||| |||| |||||||||||||| || | || | Sbjct 2753926 ATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 2753867 Query 27250 ATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCA 27309 ||| ||| || ||| |||||||| ||| |||| | ||| | || | ||||| Sbjct 2753866 ATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCT 2753807 Query 27310 GCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGT 27369 || || |||| ||||| || ||| ||||| ||||||||||| |||| | ||| Sbjct 2753806 GCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAAGT 2753747 Query 27370 TCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGG 27429 ||||| ||||| ||||||||| | | || | | |||||| | || | || | Sbjct 2753746 TCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 2753687 Query 27430 AAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAG 27489 |||||||||| || || ||||| ||||| | |||| ||||| || | |||||| || Sbjct 2753686 CAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAA 2753627 Query 27490 TGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATAC 27549 || | | ||| || ||| || | || |||||||| || || ||||| ||||| Sbjct 2753626 TGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAA 2753567 Query 27550 ATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATG 27609 || | |||||| ||| || ||||||||||| |||||||| || || || ||||||||| Sbjct 2753566 ATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATG 2753507 Query 27610 AATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAAC 27669 || |||| ||| || | |||||| | || | || |||||||||| ||||| ||| Sbjct 2753506 AAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAAC 2753447 Query 27670 CA 27671 || Sbjct 2753446 CA 2753445 >seq46 Length=2187656 Score = 284 bits (314), Expect = 2e-71 Identities = 359/487 (74%), Gaps = 5/487 (1%) Strand=Plus/Plus Query 27139 GATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGT 27198 ||| |||| ||| ||||| ||||| | |||||| || || ||||||||||| ||||| Sbjct 1370349 GATGCACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGC 1370408 Query 27199 TCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCG 27258 ||| ||| |||||||| ||| |||| |||||||||||||| || | || |||| |||| Sbjct 1370409 TCTACCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCA 1370468 Query 27259 GAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGA 27318 |||||| |||||||||| || || | | ||| || ||| | ||||| || || ||| Sbjct 1370469 GAGAAACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGA 1370528 Query 27319 GCAGAATATGCTACACAGATCCATGGACGCATACCTAAAC-GATATGAGAGTTCCCACTC 27377 || |||||||| ||| ||||| ||| ||||||| | || || || | ||||||||||| Sbjct 1370529 GCTGAATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTA-AGTTCCCACTC 1370587 Query 27378 ACGTCCCATATAAGCATAGATGC-CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGAC 27436 ||| ||||||||| || || | | | | | ||| || | || | || | |||||| Sbjct 1370588 ACGACCCATATAA-CA-AGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGAC 1370645 Query 27437 CACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGAC 27496 |||| || || ||||| ||||| || ||||| |||||||| |||||||| || || | | Sbjct 1370646 CACCATTGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATC 1370705 Query 27497 CGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTG 27556 |||| || || |||| | || ||||||| || || ||||| ||||| | | | Sbjct 1370706 CGATCGCCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAG 1370765 Query 27557 AACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGA 27616 ||||| || || | |||||||| |||||||| | || | ||||| ||||| |||| Sbjct 1370766 AACCAAAAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGA 1370825 Query 27617 CAATGAA 27623 ||| || Sbjct 1370826 TAATAAA 1370832 >seq9200 Length=658 Score = 165 bits (182), Expect = 1e-35 Identities = 183/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 |||||||||| || || ||||| ||||| | ||||| |||||||| |||||||| || | Sbjct 638 AAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAAT 579 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | | ||||| || ||| | || | || |||||||| || || ||||| ||||| | Sbjct 578 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 519 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 | ||||||| ||| || ||||||||||| |||||||| || || || |||||||||| Sbjct 518 GTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCGATGA 459 Query 27611 ATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACC 27670 | |||| ||| || | |||||| | || | || |||||||||| ||||| |||| Sbjct 458 AGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC 399 Query 27671 AACC 27674 | || Sbjct 398 ATCC 395 >seq581 Length=5673 Score = 154 bits (170), Expect = 2e-32 Identities = 236/333 (71%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 27367 AGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGT 27426 |||||||||||||| ||||||||| | | || | | |||||| | || | || Sbjct 5667 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 5608 Query 27427 TGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAG 27486 | ||||||| || || || ||||||||||| | ||||| ||||||||| |||| Sbjct 5607 TCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAA 5552 Query 27487 AAGTGGAGACCGATTGCATTTGAACTTGGGACAACT----GCACCAGAAATGATGT---- 27538 ||||| | ||||| || ||| | || | | | |||||||| || || | Sbjct 5551 AAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATA 5492 Query 27539 -TGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGT 27597 |||| ||||| | | ||||||| ||| || ||||||||||| |||||||| || || Sbjct 5491 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 5432 Query 27598 GGTGCTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAACAGTGTTGGGATCAT 27656 || || |||||||| |||| ||| || |||| |||||| | || | || |||||||| Sbjct 5431 GGGGCAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAGGTAGGGATCAT 5373 Query 27657 CAGTACACCGAACCAACCAACATACAAACGGTT 27689 || ||||||||||| || | || | |||||| Sbjct 5372 CAAAACACCGAACCATCCGATGTAAAGACGGTT 5340 >seq4 Length=6248241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || |||||||| |||||||||||||||||||| |||||||| ||||||||||| Sbjct 3393076 CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTGCAAAAAACCCGTGGAGAGCG 3393017 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 ||||| | | | | || || | ||| ||| | ||| |||||||| | || || Sbjct 3393016 ACAAAAGTCTACAAACCACCTAATTGACACCAAAGAGTAAAATCCCCTTGTGCTTCTGGT 3392957 Query 24165 CCCCAAAGTAG 24175 ||||| ||||| Sbjct 3392956 CCCCATAGTAG 3392946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665396356037520