Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq131 114 2e-20 seq8 114 2e-20 seq93 111 2e-19 seq68 111 2e-19 seq49 84.2 3e-11 >seq131 Length=616296 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| ||| | ||||| || || || ||||| || |||||||| || || || Sbjct 272886 CTTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTT 272827 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||| ||||| |||||| || || Sbjct 272826 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 272767 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 272766 GCTCATCTCCCGCGACGAGGGCCTGCAC 272739 >seq8 Length=5380884 Score = 114 bits (126), Expect = 2e-20 Identities = 218/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| ||| ||| || || || || || ||| Sbjct 175130 GGAGCCAAGATCCCCAAGGGATGCCTCCTCGTGGGCCCGCCTGGGACAGGTAAAACTCTC 175189 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| ||||| | | Sbjct 175190 CTTGCGCGTGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCTGCCTCCGAG 175249 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| ||||| ||||| | || ||||| || | ||| Sbjct 175250 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCATCCAGGGTCAGGGACCTCTTCGAGAAGGCC 175309 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 | || || || |||||||||||||||||||| || || || || | ||| || Sbjct 175310 AAGGCCAAGGCGCCGTGCATTGTCTTCATTGATGAGATCGACGCCGTTGGGAGGCAGCGT 175369 Query 175515 -----CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | || ||||||| | ||| |||||||| || || || ||||| || || Sbjct 175370 GGTGCCGGCCTTGGTGGT------GGAAACGACGAGAGGGAGCAGACCATTAACCAGCTG 175423 Query 175570 CTCACCGAGATGGATGGCTTTG 175591 || || |||||||| ||||||| Sbjct 175424 CTGACGGAGATGGACGGCTTTG 175445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||| ||||| ||||| | || || ||||| ||| | | ||| Sbjct 1264857 TTCGTGGAGATGTTTGTCGGTGTTGGTGCATCCCGTGTCCGTGATCTGTTTAAGAAGGCC 1264916 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| ||| || || || || ||||||| |||||||| || || | ||| | Sbjct 1264917 AAGGAGAATGCACCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGAGA 1264976 Query 175516 AGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | ||||| ||| | |||||| || || || || || | || || || | Sbjct 1264977 GGAACTGGTATCGGT---GGTGGAAATGATGAAAGGGAGCAGACCCTGAACCAGCTTTTG 1265033 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 |||||||||||||| ||||| | ||||| || | |||||||| ||||| || || Sbjct 1265034 ACCGAGATGGATGGTTTTGAAGGGAACACTGGAATAATTGTTATTGCTGCCACCAACCGA 1265093 Query 175633 GTGGATAT 175640 | ||||| Sbjct 1265094 GCTGATAT 1265101 >seq93 Length=1192474 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | ||||| || || || ||||| |||||||| || || || || Sbjct 325374 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 325315 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||| || || |||||||| ||||| ||||| || || Sbjct 325314 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 325255 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || ||||| || |||||||| ||| || ||||| Sbjct 325254 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 325216 >seq68 Length=1664768 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| |||| || ||||| ||| | | ||| Sbjct 281569 TTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCTCGGGTCCGTGATCTGTTTAAGAAGGCC 281510 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| ||||||||||| || | ||| | Sbjct 281509 AAGGAGAATGCCCCTTGCATAGTGTTTGTTGATGAAATTGATGCGGTTGGAAGGCAGAGA 281450 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||||| | | |||||| || || || || || | |||||||| | || Sbjct 281449 GGAACTGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACCCTCAATCAACTTTTGACT 281390 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | || || || | ||||| || |||||||| || | Sbjct 281389 GAGATGGATGGTTTTGAGGGAAACACCGGAATAATTGTTATAGCTGCCACTAACCGAGCT 281330 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 ||||| | ||| || || ||| | || || || ||||| Sbjct 281329 GATATTTTGGATTCTGCTCTACTTAGACCTGGACGCTTTGA 281289 Score = 105 bits (116), Expect = 8e-18 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| || ||| |||| || || || || || || || ||| Sbjct 1478009 GGAGCCAAGATCCCAAAGGGATGCCTCCTCGTCGGCCCACCTGGGACAGGCAAAACACTC 1477950 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| ||| || | || || | || || ||| || ||| | ||| | | Sbjct 1477949 CTCGCCCGTGCCGTCTCTGGGGAGGCCGGGGTACCCTTCTTCTCCTGCGCCGCCTCCGAG 1477890 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| ||||| ||||| | || ||||| || | || Sbjct 1477889 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCGTCCAGGGTCAGGGACCTCTTCGAGAAGGCT 1477830 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || || | ||| || Sbjct 1477829 AAGGCCAAGGCGCCTTGCATTGTCTTCATTGATGAGATTGATGCTGTCGGGAGGCAGCGT 1477770 Query 175516 AGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | ||||| | | | | ||| || ||||| || || || ||||| || || ||||| Sbjct 1477769 GGTGCTGG-GCTCGGTGGTGGAAACGATGAGAGGGAGCAGACCATTAACCAGCTGCTCAC 1477711 Query 175575 CGAGATGGATGGCTTTG 175591 ||| ||||| ||||||| Sbjct 1477710 CGAAATGGACGGCTTTG 1477694 >seq49 Length=2122476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| |||| || |||||||| |||| || || |||| | || |||| || Sbjct 612726 GGGACTTCGATTATGACTACTTTGGGTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA-- 612669 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 ||| | ||| | | | |||| ||||| ||||||| ||| | || || | || || Sbjct 612668 GCTTGGTGGGAAGGTTGTCGAAAGACCACAACACATGTTAATGAGAGTTTCAGTGGGGAT 612609 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| |||||||| |||| | | | |||||| | |||||| || | ||| Sbjct 612608 ACACAAGGATGACATTGAATCTGCCATCAAAACATACCATCTGATGTCTCAGCGCTGGTT 612549 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATG 75358 | || || ||||||| || |||||||||||||| || || || ||| || Sbjct 612548 TACACATGCTTCACCAACGCTTTTCAATGCTGGTACTCCCAGGCCCCAGGTG 612497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596481710383680