Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq7681 392 4e-104 seq21 253 3e-62 seq46 197 2e-45 seq9200 147 3e-30 seq581 136 5e-27 >seq7681 Length=829 Score = 392 bits (434), Expect = 4e-104 Identities = 454/609 (75%), Gaps = 2/609 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 609 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 550 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 549 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 490 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| |||||||| || | |||||| | || ||| ||| Sbjct 489 TGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAAC 430 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | | ||| || || | | ||| | ||||||||| | | | | |||||| ||| Sbjct 429 CAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 370 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| ||||||||||||| |||||| || || |||||||| ||||| ||||| || Sbjct 369 CTA-GCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 311 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 |||||| ||||||||||| || ||||| | || ||| || | |||||| || || || Sbjct 310 CTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCT 251 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 250 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 191 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || ||||||||||| ||||| |||||||| |||||||| Sbjct 190 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATAC 131 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || || Sbjct 130 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 71 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| || || | ||||| || || |||||| | || ||||| |||||| || Sbjct 70 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 11 Query 8490 ACAGATCCA 8498 | ||||| Sbjct 10 AGCAATCCA 2 >seq21 Length=3603864 Score = 253 bits (280), Expect = 3e-62 Identities = 417/597 (70%), Gaps = 7/597 (1%) Strand=Plus/Minus Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 |||||| ||||| ||||| | | ||| || || || |||| |||||||||||||| || Sbjct 2754037 TTCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGAATAG 2753978 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| || || || |||||| |||| ||||| || Sbjct 2753977 -GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTG 2753919 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 || ||| |||||||| | ||| ||||| || |||||||| || |||| || ||| |||| Sbjct 2753918 CTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATT 2753859 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || || |||||| || || | ||||| | || |||||| | || || Sbjct 2753858 AGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCTGCAACAGG 2753799 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGA--TAACT-CCCA 8531 || ||| || ||| ||||| || | |||||| || | || | ||| | |||| Sbjct 2753798 AGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAAC---ATCAACTAAGTTCCCA 2753742 Query 8532 CTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGG 8591 | | |||||| ||| || | |||| | |||||| | | || | || | | || Sbjct 2753741 TTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAGG 2753682 Query 8592 ACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAA 8651 ||| || || || ||||| ||||| | || ||||| |||| || || || || || Sbjct 2753681 ACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAA 2753622 Query 8652 TCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAA 8711 || || || ||| | |||| | ||||||||||| || ||||||||||| || || Sbjct 2753621 TCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAATTAA 2753562 Query 8712 TGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGC 8771 ||||| |||||| ||||||||||| || ||||| || || ||||| || || || || Sbjct 2753561 AGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAGGC 2753502 Query 8772 CACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCA 8828 | ||||| | || |||| || ||| ||| ||||| | ||| |||||||| Sbjct 2753501 GATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 2753445 >seq46 Length=2187656 Score = 197 bits (218), Expect = 2e-45 Identities = 327/471 (69%), Gaps = 1/471 (0%) Strand=Plus/Plus Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || ||||||||||| ||||| |||||| | | |||||| Sbjct 1370363 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAATAC 1370422 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||| ||||| || |||||||| || |||| || ||| ||||||||||| || || Sbjct 1370423 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCTTG 1370482 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||| | | || | ||||| || || |||||| | || ||||| |||||| || Sbjct 1370483 ACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1370542 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || |||||| | | | | | ||||||| | |||||| ||| Sbjct 1370543 AGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAACA 1370602 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | | | ||| ||| || | | || | || ||| ||||| || || || ||||| Sbjct 1370603 AGCTACACAAGTAA-GAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCA 1370661 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 ||||| | | |||||||||||||| || || || || ||||| || || ||| Sbjct 1370662 TTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACAAGT 1370721 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 ||||| | |||||||||| || ||||||||||| | || ||||| || ||| | Sbjct 1370722 TGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGCTT 1370781 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||||| || ||||| | || | || ||||| || || | ||||| Sbjct 1370782 GCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAA 1370832 >seq9200 Length=658 Score = 147 bits (162), Expect = 3e-30 Identities = 207/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 8583 CTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642 || ||| ||||| || || || ||||| ||||| | | |||||||||||||| || || Sbjct 643 CTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTA 584 Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702 || || ||||| || || |||| |||| | ||||||||||| || |||||||| Sbjct 583 AAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 524 Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGC 8762 ||| | || ||||| | |||||| ||||||||||| || ||||| || || || || || Sbjct 523 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGC 464 Query 8763 AATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCC 8822 || || || | ||||| | || || | || ||| ||| ||||| | ||| || Sbjct 463 GATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACC 404 Query 8823 AAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 |||||| |||| ||||| | || | || || || | ||| | ||| || Sbjct 403 AAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAA 353 >seq581 Length=5673 Score = 136 bits (150), Expect = 5e-27 Identities = 244/356 (69%), Gaps = 13/356 (4%) Strand=Plus/Minus Query 8527 TCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGA 8586 ||||||| | |||||| ||| || | |||| | |||||| | | || | || | Sbjct 5664 TCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 5605 Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| || || || ||||||||||| | | ||||||||||| || || ||| Sbjct 5604 TAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTAAAAG 5549 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACA----GCACCAGAGATGATGT-----TG 8697 || ||||| || || |||| || | || ||||||||||| || | || Sbjct 5548 TGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTG 5489 Query 8698 TTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGA 8757 |||||||| | || ||||| | |||||| ||||||||||| || ||||| || || || Sbjct 5488 TTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGG 5429 Query 8758 GCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGA 8817 ||||| || || || | ||||| || || || | || ||| ||| ||||| | | Sbjct 5428 GCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAA 5369 Query 8818 ACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 || || ||||| |||| ||||| | ||| | || || || | ||| | ||| || Sbjct 5368 ACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615771668071920