Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq7681 376 7e-100 seq46 210 6e-50 seq21 205 3e-48 seq581 120 9e-23 seq9200 118 3e-22 >seq7681 Length=829 Score = 376 bits (416), Expect = 7e-100 Identities = 445/603 (74%), Gaps = 0/603 (0%) Strand=Plus/Plus Query 41609 TGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTAT 41668 ||||| |||||| || || |||||||| || ||||| |||||||| ||| | |||| Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 41669 CCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAAC 41728 || |||| || || ||| ||||||| |||||| || || || || || || |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 41729 TACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGT 41788 | ||| | || |||||||| |||||||| || ||||||||||| ||||||||| | ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 41789 GTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCG 41848 || || || ||||| || || | ||| ||||||||| ||| | |||| || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 241 Query 41849 TCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAA 41908 | || | || || |||||| | | || || | |||||||| ||||||||| Sbjct 242 AGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAA 301 Query 41909 GAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAA 41968 |||||||||||||| || ||||| ||||||||||| ||||||||||| | ||||||||| Sbjct 302 GAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAA 361 Query 41969 TATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTA 42028 |||||||| || || || || ||| | | || ||||| | ||||| |||||||| ||| Sbjct 362 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTA 421 Query 42029 GGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAAC 42088 || || ||||| |||| | || | ||| ||||| |||||| | ||||||||||| Sbjct 422 GGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAAT 481 Query 42089 TTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTT 42148 || ||||||||| | | | | | || | || || || || |||||||| || | Sbjct 482 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 541 Query 42149 AACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTT 42208 |||||||| || ||||| | || || ||||| || || || || ||||||||||| || Sbjct 542 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 601 Query 42209 GAC 42211 ||| Sbjct 602 GAC 604 >seq46 Length=2187656 Score = 210 bits (232), Expect = 6e-50 Identities = 336/481 (70%), Gaps = 1/481 (0%) Strand=Plus/Minus Query 41327 TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTC 41386 |||||||||||||| ||| || | || | || || ||||| || || | || | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 41387 GCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAAT 41446 ||| || | | ||||| ||||| || || || || | | | |||| | || Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || |||||| | || || |||||||||||||||||||| | |||||||||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATG 41566 || || ||||| | | || | || | || ||| | ||| ||| ||| ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTG-TTATATG 1370594 Query 41567 GGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTAC 41626 || || ||||||||||||| | | || || ||| || ||||| |||||| || Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 41627 TCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCT 41686 || |||||||| || ||||| |||||||| ||| | |||| | | || || || | Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 || ||||||| |||| | || || || || || || ||||||| ||| | || ||| || Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 | |||||||| || ||||||||||| ||||||||| | ||||| || || ||| |||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGT 1370354 Query 41807 G 41807 | Sbjct 1370353 G 1370353 >seq21 Length=3603864 Score = 205 bits (226), Expect = 3e-48 Identities = 402/588 (68%), Gaps = 11/588 (2%) Strand=Plus/Plus Query 41265 GTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTT 41324 ||||||| | ||||||| || || | ||||| || | ||| ||| | | |||||| Sbjct 2753431 GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC--TGCAACTT 2753487 Query 41325 --GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAAC 41381 || |||||||||||||| | | || || || || || || ||||| || || || | Sbjct 2753488 CCGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGC 2753547 Query 41382 CCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCA 41441 | || ||| || | | ||||| ||||| || || || || ||| | |||| Sbjct 2753548 CTGTTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTT 2753607 Query 41442 GTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGC 41501 | || ||| || | || || |||||| |||| ||||| || ||||||||||| Sbjct 2753608 CTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGT 2753667 Query 41502 TGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTT 41561 | ||||| || ||||| | | || | || | |||||| | |||| || | || Sbjct 2753668 TATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTT 2753727 Query 41562 ACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTG 41621 | ||||| || || ||||||||||| | | | || ||| | || ||||| |||||| Sbjct 2753728 ATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTG 2753787 Query 41622 CGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGG 41681 | || || ||||||| || ||||| || ||| | ||| | | || || ||| || | Sbjct 2753788 CCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAG 2753847 Query 41682 GCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGT 41741 | ||||||| ||| |||| | || || || || || || ||||||| ||| | || | Sbjct 2753848 GAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTAT 2753907 Query 41742 TCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTAT 41801 ||||||| ||||||| || |||| |||||| |||||||| | ||||| || || |||| Sbjct 2753908 TCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTAT 2753967 Query 41802 TTGGTGGGAGTT--TGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847 | || | ||| | ||| ||||||||| || | |||| || || Sbjct 2753968 TCGGCG---GTTCCTATTCAGTGCTATGCATAGTTCCTTGGTAACCTC 2754012 >seq581 Length=5673 Score = 120 bits (132), Expect = 9e-23 Identities = 231/336 (69%), Gaps = 15/336 (4%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| |||| || Sbjct 5340 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 5398 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || ||||||||||| || | | || || || || || || ||||| || || || Sbjct 5399 TTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 5458 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCA-----GGAGCCGTCGTT 41434 || || |||| || | | ||||| ||||| || |||| | || ||| | || Sbjct 5459 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATT 5518 Query 41435 CCGAGC-AGTAATGCC---ATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACT 41490 || | | | | ||| |||||| | ||||| ||||| ||||||||||| | | Sbjct 5519 CCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGT 5574 Query 41491 TGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGG 41550 |||||| ||| | ||||| |||||||| | | || | || | |||||| | |||| Sbjct 5575 TGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 5634 Query 41551 CGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAG 41586 || | ||| ||||| || |||||||||||||| Sbjct 5635 TGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAG 5670 >seq9200 Length=658 Score = 118 bits (130), Expect = 3e-22 Identities = 186/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 || |||||||| | |||||||| || || | ||||| || | ||| ||| |||| Sbjct 380 AATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGC--- 435 Query 41320 AACTT--GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCG 41376 ||||| || |||||||||||||| | | || || || || || || ||||| || || Sbjct 436 AACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCG 495 Query 41377 AGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCC 41436 || || || |||| || | | ||||| ||||| || || || || ||| | |||| Sbjct 496 TGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCC 555 Query 41437 GAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGA 41496 | | || |||||| | || || |||||||||||||||||||| | ||||||| Sbjct 556 TACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGA 615 Query 41497 ATGGCTGTACAACGGCGGTCC 41517 |||| | ||||| || ||||| Sbjct 616 ATGGTTATACAATGGTGGTCC 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146193936015344