Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq7681 378 2e-100 seq21 228 2e-55 seq46 219 1e-52 seq9200 165 2e-36 seq581 149 2e-31 >seq7681 Length=829 Score = 378 bits (418), Expect = 2e-100 Identities = 447/603 (74%), Gaps = 2/603 (0%) Strand=Plus/Plus Query 42664 TGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTAT 42723 ||||| |||||| || || || ||||| || || || ||||| || ||| | | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 42724 CCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAAC 42783 || |||| ||||| ||| || ||||| |||||| | || || || ||||| |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 42784 TTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGT 42843 || ||| | || |||||||| || || ||||| ||||||||||| || || ||| | ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 42844 GTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCT 42903 || || || ||||| || || || | ||| |||||||||||| | || |||||| Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 241 Query 42904 TCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAA 42963 | | | | ||||| |||||||| ||| ||| | || ||||| || |||||| Sbjct 242 AGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAA 301 Query 42964 GAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAA 43023 ||||| ||||||||||||||||| || || || ||||| ||||| || | ||||||||| Sbjct 302 GAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAA 361 Query 43024 TATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGT 43082 ||||| | |||| || || ||| ||||| |||||||| | || |||||||| || || Sbjct 362 TATGC-TAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 43083 GGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAA 43142 ||||| ||||||||| || | || | ||||||||||| || ||| | |||||||| || Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 43143 CTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTT 43202 || |||||||| | ||||||| || || || || ||||||||||||||| | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 43203 GAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCT 43262 || ||||| || ||||| | || || |||||||| || ||||| || |||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 43263 TGA 43265 || Sbjct 601 AGA 603 >seq21 Length=3603864 Score = 228 bits (252), Expect = 2e-55 Identities = 422/612 (69%), Gaps = 8/612 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 ||| ||| || || |||| | | ||| || || || ||||||| | | |||||| Sbjct 2753392 TGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTT 2753450 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | |||| || || |||||| |||| ||||| Sbjct 2753451 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCCTTCAT 2753509 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || || ||||| ||||| |||||||| |||||||| ||||| | ||| ||| | | || Sbjct 2753510 CGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTA 2753569 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || |||||||||||| | | ||| | || || || | ||||| Sbjct 2753570 TGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTT 2753629 Query 42519 GTATTCGATCTGGGAAGC--CAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTAT 42576 || | | || ||||| || | |||| |||||| | |||||||| || |||| | Sbjct 2753630 TTACCCACTTTGAGAAGCGGCATTTG--TTGATGAATGGTTATACAATGGTGGTCCTTGT 2753687 Query 42577 CAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 |||| | || | |||||| | | ||| | | ||| |||| || ||||||||| Sbjct 2753688 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAA 2753747 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCT 42696 ||| | | | || ||| | || ||||| ||||||| || || | ||||| || Sbjct 2753748 CTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCA 2753807 Query 42697 GCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATG 42756 || || || || | ||| | |||| || ||| ||||| |||||| |||| ||| Sbjct 2753808 GCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATG 2753867 Query 42757 CCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATT 42816 || | || || || ||||| |||||||| ||| | || |||||||| | || ||||| Sbjct 2753868 GCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATC 2753927 Query 42817 CTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCA 42876 |||| |||||| || || || | ||||| || || ||||| || || || | ||| Sbjct 2753928 CTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGT 2753986 Query 42877 GCTATGCATGGT 42888 ||||||||| || Sbjct 2753987 GCTATGCATAGT 2753998 >seq46 Length=2187656 Score = 219 bits (242), Expect = 1e-52 Identities = 339/482 (70%), Gaps = 3/482 (1%) Strand=Plus/Minus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| |||| |||||||| |||| ||| |||| |||||||| ||||| | ||| | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 | ||| ||| | || ||||| ||||| || |||||||||| | | | || | || Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 || || ||| | ||||| || | || |||||||| | ||||| |||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG-GTATCTTCTCTTACTT 42620 ||||| || |||||| |||| | || | || ||| | | | ||| ||| | || | Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGTTATA--T 1370595 Query 42621 GGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTA 42680 ||| || || ||||||||| | | | || || ||| || ||||| |||||| || Sbjct 1370594 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 1370535 Query 42681 CTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTC 42740 || || ||||| || || || ||||| || ||| | | || | | || ||||| Sbjct 1370534 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 1370475 Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 ||| || ||||| ||| || | || || || ||||| |||||||| ||| | || ||| | Sbjct 1370474 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 1370415 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGG 42860 || || || ||||| ||||||||||| || || ||| | ||||| || || ||| ||| Sbjct 1370414 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGG 1370355 Query 42861 TG 42862 || Sbjct 1370354 TG 1370353 >seq9200 Length=658 Score = 165 bits (182), Expect = 2e-36 Identities = 220/303 (73%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | || |||||||| | || |||||| Sbjct 344 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTT 403 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || || |||||| |||| ||||| Sbjct 404 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCAT 462 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || |||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || || Sbjct 463 CGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 522 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || |||||||||||| | | |||| | || || ||| | ||||| Sbjct 523 TGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTT 582 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | |||| |||||| | |||||||| || |||||| | Sbjct 583 TTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 642 Query 42579 GCT 42581 ||| Sbjct 643 GCT 645 >seq581 Length=5673 Score = 149 bits (164), Expect = 2e-31 Identities = 259/371 (70%), Gaps = 17/371 (5%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 5304 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 5363 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| ||||||||| Sbjct 5364 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCA 5421 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || | Sbjct 5422 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 5481 Query 42458 ATGGCAACA-----ACATCATCTCTGGTGCC----GTCGTGCCTAGCAGTAACGCAATTG 42508 |||| |||| | || |||||||||||| || | |||| | || || | Sbjct 5482 ATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCG 5541 Query 42509 GACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCG 42568 || | || || || ||||||||| | |||| || ||| | |||||||||| Sbjct 5542 GATTGCACTTTTA----CCCTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 5597 Query 42569 GACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCG 42628 | |||||| |||| | || | |||||| | | ||| | | ||| |||| || | Sbjct 5598 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 5657 Query 42629 AATGGGAACTT 42639 | ||||||||| Sbjct 5658 AGTGGGAACTT 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143512711328728