Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq7681 347 4e-91 seq21 230 7e-56 seq46 214 5e-51 seq581 156 1e-33 seq9200 154 4e-33 >seq7681 Length=829 Score = 347 bits (384), Expect = 4e-91 Identities = 444/609 (73%), Gaps = 2/609 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 609 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 550 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 549 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 491 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| |||||||| || | ||||| | || || | Sbjct 490 TTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAA 431 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| || || Sbjct 430 CCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAA 371 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 370 ACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATAAGT 311 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| || || || | ||| || | | || || ||||| Sbjct 310 CTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCT 251 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 250 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 191 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || || || ||||| |||||||| Sbjct 190 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATAC 131 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| |||||||||||||| || | |||||| |||||| ||||| ||||| Sbjct 130 AATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 71 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || || ||| || | | || |||| ||||||||| Sbjct 70 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 11 Query 26476 AAATATCCA 26484 | ||||| Sbjct 10 AGCAATCCA 2 >seq21 Length=3603864 Score = 230 bits (254), Expect = 7e-56 Identities = 393/566 (69%), Gaps = 3/566 (1%) Strand=Plus/Minus Query 26264 TGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGG 26323 ||||||||| ||| || | || ||||| || ||||| ||||| || || ||||| Sbjct 2753994 TGCATAGCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGA 2753936 Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||| | || || || || | ||| |||||||| | ||||||||| |||||||||||||| Sbjct 2753935 TGCGTAAGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATT 2753876 Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443 || | || ||| |||| | |||||| ||||| || ||| || | ||||| | || Sbjct 2753875 CCTAAAGCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCT 2753816 Query 26444 AGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTG 26503 ||| || | | || | || ||| ||||||| ||||| || | ||| || | | Sbjct 2753815 GTAGCAGCTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACAT 2753756 Query 26504 TAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATA 26563 || |||||||| | | || ||| ||||| || | ||||||||| | | | Sbjct 2753755 CAACTAAGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 2753696 Query 26564 ATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGAT 26622 || || | | | || || |||||||||| ||| || || | |||| ||||| || | Sbjct 2753695 ATTAGCTCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCC-GCTTCTCAAAG 2753637 Query 26623 CGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATT 26682 ||||||||||| | || ||| || ||| | || | | || || || || ||||| Sbjct 2753636 TGGGTAAAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATT 2753577 Query 26683 GTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGG 26742 |||||| || ||||| || || |||| |||||||| || ||||| |||||||| || || Sbjct 2753576 GTTTCCATAAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGG 2753517 Query 26743 TGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAG 26802 |||||||||||||| | ||||| | ||| || | | |||| || ||||| | Sbjct 2753516 AGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAA 2753457 Query 26803 CACCCCGAACCATCCCACATAGAGAC 26828 || || ||||||| || || |||| Sbjct 2753456 AACACCAAACCATCGCATGTAAAGAC 2753431 >seq46 Length=2187656 Score = 214 bits (236), Expect = 5e-51 Identities = 332/473 (70%), Gaps = 1/473 (0%) Strand=Plus/Plus Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| ||||| ||| || ||||| ||||| || || || || ||| | | |||| Sbjct 1370361 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAAT 1370420 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||||||||| |||||||||||||| || | || ||| |||||| ||||| ||| Sbjct 1370421 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCCT 1370480 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || |||| || |||| ||||| || || ||| || | | || |||| ||||||| Sbjct 1370481 TGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 1370540 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| || ||| || || | | || |||||||||| | || ||| Sbjct 1370541 ACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACCCATATAA 1370600 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| | | |||||| || | | ||| || | ||| || || |||||||||| | Sbjct 1370601 CAAGCTAC-ACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAAC 1370659 Query 26594 CACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAG 26653 || || || || | |||||||||| || ||||||||||| | |||||| || | | Sbjct 1370660 CATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCACAA 1370719 Query 26654 GAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGC 26713 | || | | | || || || ||||||||||| || | ||| || || ||| ||| Sbjct 1370720 GTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAGGC 1370779 Query 26714 TCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 | || || ||||| ||||||| || | ||||| |||||||| | ||||| Sbjct 1370780 TTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAA 1370832 >seq581 Length=5673 Score = 156 bits (172), Expect = 1e-33 Identities = 231/324 (71%), Gaps = 15/324 (5%) Strand=Plus/Minus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| |||| Sbjct 5640 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 5581 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||| ||||||| || | |||||| || ||| | Sbjct 5580 TCATCAACAGATGCAGCTTCCCAG----GGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 5525 Query 26657 GGGACGACT----GCTCCTGA-----TATTATATTGTTTCCGTACATTAACGAGCCGGAA 26707 || | || | || || || ||| ||||||||||| || | ||| || || ||| Sbjct 5524 GGTAGGAATAATGGCACCAGAGATAATATAATATTGTTTCCATAAAGTAAAGAACCAGAA 5465 Query 26708 ACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA- 26766 || |||||||| || ||||| |||||||| || || || |||||||| || | ||||| Sbjct 5464 ACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAAGCGATAATAAAT 5405 Query 26767 ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAG 26826 ||| | ||| || | | |||| || ||||| | || ||||||||||| | || || Sbjct 5404 ACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 5346 Query 26827 ACGGTTCTCAGTACTTGTAACCCA 26850 |||||| || || || || | ||| Sbjct 5345 ACGGTTTTCGGTGCTAGTTATCCA 5322 >seq9200 Length=658 Score = 154 bits (170), Expect = 4e-33 Identities = 207/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 26563 AATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGAT 26622 ||| || | ||| || || |||||||||| ||| || || | | |||||||||| || Sbjct 649 AATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAAT 590 Query 26623 CGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATT 26682 ||||||||||| | |||||| || ||| | || | | || || || || ||||| Sbjct 589 TGGGTAAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATT 530 Query 26683 GTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGG 26742 |||||| || | ||| || || ||||| |||||||| || ||||| |||||||| || || Sbjct 529 GTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGG 470 Query 26743 TGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAG 26802 |||||||||||||| | ||||| | ||| || | | |||| || ||||| | Sbjct 469 GGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 410 Query 26803 CACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 || || |||||||| | || ||||| || || || || || | ||| Sbjct 409 AACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147691326413120