Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq7681 437 1e-117 seq21 288 1e-72 seq46 277 2e-69 seq9200 185 1e-41 seq581 159 4e-34 >seq7681 Length=829 Score = 437 bits (484), Expect = 1e-117 Identities = 467/614 (76%), Gaps = 2/614 (0%) Strand=Plus/Plus Query 155343 TTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTA 155402 |||||| ||||||||| || || || || | ||||| ||||| ||| | |||| Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 155403 TCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAA 155462 ||| | |||||||| ||||||||||| |||||| | || |||||||||||||| || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 155463 CTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGG 155522 || |||| | || ||||| ||||| ||||| ||||||||||| || || |||||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 155523 AGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATC 155582 ||||| ||||| ||||| || || || ||| ||||||||| ||||| ||||| || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 155583 TTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACA 155642 | | ||| | ||||| ||||| | || ||| || | |||||||| || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 155643 AGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCA 155702 ||| ||||| |||||||||||||| |||||||| || || || ||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 155703 GTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGT 155762 ||||| ||||||||||| | | | ||||||||| | ||||| |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 155763 CTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAA 155822 | |||||| |||||| | ||| | || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 155823 CTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTC 155881 |||||||| |||||||| || || | ||| || || ||| ||||| || || Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAATACTTGGGCTGATATCA 539 Query 155882 TTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTC 155941 | ||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 540 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 599 Query 155942 TTGACCTTGCTGCT 155955 | ||| | |||||| Sbjct 600 TAGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 288 bits (318), Expect = 1e-72 Identities = 423/596 (71%), Gaps = 7/596 (1%) Strand=Plus/Plus Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCC 155073 ||||| |||||| | ||||||||| | | | |||| || | || ||| ||||| Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCC 2753504 Query 155074 TTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTA 155133 ||||| || || ||||| ||||| ||||||||||||||||| || || |||||||||| Sbjct 2753505 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTA 2753564 Query 155134 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTC 155193 || ||||| ||||| || ||||||||||| || | ||| ||| || || | | Sbjct 2753565 ATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTG 2753624 Query 155194 CACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCT 155253 || || || || |||| ||||| ||| | ||||||| ||||| ||||||||||||||| Sbjct 2753625 CATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCT 2753684 Query 155254 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAG 155310 | | || | || | |||||| | | || | ||| | | | |||||| | Sbjct 2753685 TGTGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAA 2753741 Query 155311 TGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 155370 ||||||||| || || | || |||||||||||||| |||||| || || | || Sbjct 2753742 TGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCT 2753801 Query 155371 GTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 155430 || | ||||| ||| | ||| | | || ||| |||||||| ||| ||| || Sbjct 2753802 GTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAAT 2753861 Query 155431 GCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACAC 155490 | ||| || | || |||||||||||||| |||| |||| | || ||||| ||| | ||| Sbjct 2753862 GGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCAC 2753921 Query 155491 AATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT 155550 || ||||||| ||| || || ||||| | || ||||| ||||| ||||| || || || Sbjct 2753922 AACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTA 2753980 Query 155551 TTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGA 155606 ||| ||||||||| |||| ||||| || ||| | ||| | || || ||||| Sbjct 2753981 TTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 277 bits (306), Expect = 2e-69 Identities = 348/474 (73%), Gaps = 3/474 (1%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| ||||||||||||| || | ||| |||| |||||||||||||| | || | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||||||||| | ||||| ||||| || |||||||||| || | || | || Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || || | || || || || ||||||||||| ||| |||||||||| ||||| ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCG-GAATCACAGCATACTG 155300 ||||||||||||| | || | || | || ||| | | | | | | ||| || Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGTTATA-TG 1370594 Query 155301 TGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 155360 |||||| ||||||||||| || | |||| || |||| ||||||||| ||||||||| Sbjct 1370593 -GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 1370535 Query 155361 CTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTC 155420 || || || || | ||||| ||||| ||| | |||| || |||||||||| Sbjct 1370534 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 1370475 Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCA 155480 ||||||||||| ||| || | || |||||||||||||| |||| |||| | || ||| | Sbjct 1370474 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 1370415 Query 155481 AGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGT 155534 | ||| ||||| ||||||||||| || || |||||| | || ||||| ||||| Sbjct 1370414 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq9200 Length=658 Score = 185 bits (204), Expect = 1e-41 Identities = 212/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || || || | || |||| ||||| |||||| | | Sbjct 354 TCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGA 413 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| || || |||| Sbjct 414 TGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTC 473 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 474 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 533 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| || || || | || || || || |||| Sbjct 534 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTT 593 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254 ||||||| ||| || ||||||| ||||| |||||||||||||||| Sbjct 594 GGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 159 bits (176), Expect = 4e-34 Identities = 212/294 (72%), Gaps = 13/294 (4%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 5314 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 5373 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||| ||||| |||| Sbjct 5374 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTC 5433 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACA--- 155146 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| |||| Sbjct 5434 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 5493 Query 155147 --ACATCATCTCTGGTGCTGTT----GTCCCTAGTTCAAACGCAATTGGTCTCCACTTCT 155200 | || ||||||||||| || | |||| ||| || || || | ||||| | Sbjct 5494 TTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTT 5553 Query 155201 ATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254 | || |||||||| ||| || ||||||||||||| |||||||| ||||||| Sbjct 5554 ACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTT 5603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584749039154160