Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq7681 374 2e-99 seq21 255 2e-63 seq46 228 2e-55 seq9200 183 9e-42 seq581 165 2e-36 >seq7681 Length=829 Score = 374 bits (414), Expect = 2e-99 Identities = 458/617 (74%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 495 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| ||||| || ||||||||| ||||| | | | Sbjct 494 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAG 435 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | ||| ||| Sbjct 434 TGAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTG 376 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 ||||| ||||||||| || |||| || |||||| |||||||| ||||| || |||||| Sbjct 375 TTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTA 316 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| || || || | || |||||| |||| ||||| Sbjct 315 TAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTT 256 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| || | | ||| Sbjct 255 TCCCTGATCAAACTAGAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAACCG 199 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || |||||||| ||||| Sbjct 198 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCC 139 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| |||||||||||||||||||||||||||| Sbjct 138 TGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAA 79 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || |||| ||||| ||||| ||| |||| | ||||||| Sbjct 78 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 19 Query 41124 TATGCCACAAATATCCA 41140 ||||| ||| ||||| Sbjct 18 TATGCAACAGCAATCCA 2 >seq21 Length=3603864 Score = 255 bits (282), Expect = 2e-63 Identities = 452/651 (69%), Gaps = 10/651 (2%) Strand=Plus/Minus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATA 40925 ||||||||||| |||||||||| || | | |||| || ||||| | |||||| Sbjct 2754045 GATTCAGTTTCAGTGGTCTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CTATGCATA 2753989 Query 40926 GCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATG 40985 ||| || | | ||| || || || || || || || | || || ||||| ||| | Sbjct 2753988 GCACTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTA 2753930 Query 40986 AGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAA 41045 || |||||||| | ||| ||||| |||| ||| |||||||| || ||| |||||||||| Sbjct 2753929 AGGATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAA 2753870 Query 41046 GGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCT 41105 | |||||||| ||| ||| || ||||| || || | ||||| | |||| ||| Sbjct 2753869 GCCATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCA 2753810 Query 41106 GCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAA 41165 |||| | |||| || || || |||| ||||| || | |||||| | | | | Sbjct 2753809 GCTGCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTA 2753750 Query 41166 AGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGT 41225 |||||||| | | ||| || ||||| || | ||| ||||| | ||||| || Sbjct 2753749 AGTTCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 2753690 Query 41226 TGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTA 41284 | | | || || || ||||||| ||| || || | ||||| |||| || | |||||| Sbjct 2753689 TCACAAGGACCACCATTGTATAACCATTCATCAACAAATGCCG-CTTCTCAAAGTGGGTA 2753631 Query 41285 GAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCC 41344 ||||| | || ||| || ||| |||| | || ||||| ||||||||||| || Sbjct 2753630 AAAATGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCC 2753571 Query 41345 GTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGC 41404 || ||||| || || |||| |||||||| || ||||| |||||||| || || ||||| Sbjct 2753570 ATAAATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGC 2753511 Query 41405 GATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACC 41464 ||| |||||||| || || | || ||||| | ||| | || ||||| | ||||| Sbjct 2753510 GATGAAGGCGATAATAAATACGGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 2753451 Query 41465 AAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||| | | ||| || | || | ||| ||||| | | |||| || || Sbjct 2753450 AAACCATCGCATGTAAAGAC-ATTTTTGGTTCTAGTTATCAAGTTGCAGAA 2753401 >seq46 Length=2187656 Score = 228 bits (252), Expect = 2e-55 Identities = 340/481 (71%), Gaps = 1/481 (0%) Strand=Plus/Plus Query 40942 CACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTG 41001 ||||| || || || || || | ||| || ||||| ||||| || |||||||| ||| Sbjct 1370353 CACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTA 1370412 Query 41002 CTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGA 41061 | | ||| |||| ||| |||||||| || ||| ||||||||||| |||||||||||||| Sbjct 1370413 CCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGA 1370472 Query 41062 AAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTG 41121 || || ||||||| | |||| ||||| ||||| ||| |||| | ||||||| Sbjct 1370473 AACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 1370532 Query 41122 TGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTAC 41181 ||||| ||| ||||| || |||||| || | | | ||||||||||| | || Sbjct 1370533 AATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGAC 1370592 Query 41182 CAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGT 41241 | || ||||| | | ||| || || | ||||| || | ||| || || || | Sbjct 1370593 CCATATAACAAGCTAC-ACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCAT 1370651 Query 41242 TGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTG 41301 |||||| ||| || || || | | |||||||| |||||||| ||||| | |||||| | Sbjct 1370652 TGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCG 1370711 Query 41302 CGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGG 41361 | | | | |||| | | ||||| ||||||||||| || || | ||| || || Sbjct 1370712 CCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAA 1370771 Query 41362 AAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGA 41421 ||| |||| || || ||||| ||||||| || | ||||| || |||||||| || | Sbjct 1370772 AAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAA 1370831 Query 41422 A 41422 | Sbjct 1370832 A 1370832 >seq9200 Length=658 Score = 183 bits (202), Expect = 9e-42 Identities = 220/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 41217 ACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAG 41276 ||||| || | ||| || || || ||||||| ||| || || | | | |||||||| Sbjct 651 ACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAA 592 Query 41277 ATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATA 41336 |||||||| ||||| | |||||| || ||| | |||| | || ||||| |||||| Sbjct 591 ATTGGGTAAAAATGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 532 Query 41337 TTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGC 41396 ||||| || || | ||| || || ||||| |||||||| || ||||| |||||||| || Sbjct 531 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 472 Query 41397 GGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATT 41456 || |||||||| |||||||| || || | || || || | ||| | || ||||| Sbjct 471 GGGGCTGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATCATC 412 Query 41457 AGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||||||||| || | ||| || || || ||||||||||| | |||||| || || Sbjct 411 AAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAA 353 >seq581 Length=5673 Score = 165 bits (182), Expect = 2e-36 Identities = 255/361 (71%), Gaps = 15/361 (4%) Strand=Plus/Minus Query 41165 AAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAG 41224 ||||||||||| | ||| || ||||| || | ||| ||||| | ||||| || Sbjct 5668 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 5609 Query 41225 TTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTA 41284 | ||| || ||||| ||||||| |||||| || | | | ||||||||| |||| Sbjct 5608 CTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTA 5553 Query 41285 GAAATGTAGTCCGATTGCGTTAGA----GCTCGGAACGACAGCTCCAGA-----TATAAT 41335 || || | |||||| || ||| | | |||| | || ||||| |||||| Sbjct 5552 AAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAAT 5493 Query 41336 ATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGG 41395 |||||| || || | ||| || || ||||| |||||||| || ||||| |||||||| || Sbjct 5492 ATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGG 5433 Query 41396 CGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCA 41454 || || ||||| || ||||| || || ||| | || || || | ||| | || |||| Sbjct 5432 AGGGGCAGCGATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCA 5374 Query 41455 TTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAA 41514 | | ||||| ||||| || | ||| || ||||| ||||||||||| | |||||| || | Sbjct 5373 TCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGA 5314 Query 41515 A 41515 | Sbjct 5313 A 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143682287591724