Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq7681 444 7e-120 seq21 268 1e-66 seq46 241 1e-58 seq581 113 5e-20 >seq7681 Length=829 Score = 444 bits (492), Expect = 7e-120 Identities = 469/616 (76%), Gaps = 6/616 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 497 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || ||||||||||||||||| | ||| | || Sbjct 496 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGC 437 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 436 AGTGAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 377 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| |||||||| || ||||| || || || |||||||| |||||||| Sbjct 376 GTTGAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTT 317 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || |||||||| | || || || | ||||| || Sbjct 316 ATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGT 257 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 256 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 197 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| ||||||||||||||||||||||| || Sbjct 196 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 137 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 136 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACT 77 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || | |||||| ||||| || || | || ||||| || || Sbjct 76 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 17 Query 67955 TGCTACACAGATCCAA 67970 ||| ||| |||||| Sbjct 16 TGCAACAGCAATCCAA 1 >seq21 Length=3603864 Score = 268 bits (296), Expect = 1e-66 Identities = 421/599 (70%), Gaps = 13/599 (2%) Strand=Plus/Minus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 ||||| || || ||||| | | ||| || || | |||| ||||||||||| || || Sbjct 2754036 TCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCACTGAATAG- 2753978 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| ||||||||||| ||||| || | || || ||||| ||| |||||||||||||| Sbjct 2753977 GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGGATGTTGTGC 2753918 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCA 67886 | ||| ||||| || | ||| |||| ||||||||||| || || | || ||| | | | Sbjct 2753917 TGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCCATACCATTA 2753858 Query 67887 GAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGA 67946 || ||| |||||||| ||| |||| |||||| | ||| || || | || ||| Sbjct 2753857 GAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCTGCAACAGGA 2753798 Query 67947 GCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGA 68006 | || || || ||| ||||||||||||||||| | || || ||||||||| | | Sbjct 2753797 GTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAAGTTCCCATTCA 2753738 Query 68007 CGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGT 68063 ||||| | | | ||| | || | | |||||| | || | || | |||| Sbjct 2753737 CGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCACAAGGA 2753681 Query 68064 CCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGA 68123 |||||||| || ||||| ||||| | | ||| ||||| || | || || || || | Sbjct 2753680 CCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAATGCAAT 2753621 Query 68124 CCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGC 68183 | ||| || ||| ||||| || |||||||| || || ||||| || || || | Sbjct 2753620 CTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAATTAAA 2753561 Query 68184 GAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCA 68243 ||||| |||||| || | |||||||| ||||| |||||||| ||||| ||||| || Sbjct 2753560 GAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATGAAGGCG 2753501 Query 68244 ATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 2753500 ATAATAAATACGGAAGT---TGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 2753445 >seq46 Length=2187656 Score = 241 bits (266), Expect = 1e-58 Identities = 348/486 (72%), Gaps = 5/486 (1%) Strand=Plus/Plus Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 |||||| ||||| || | ||| || ||||| ||||||||||||||||||||| | | ||| Sbjct 1370360 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTACCTCGAA 1370419 Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897 || | ||| |||| ||||||||||| || || | || ||| | ||||||||| || Sbjct 1370420 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCAGAGAAACTTCC 1370479 Query 67898 TTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGC 67957 |||||||| || || | |||||| ||||| || || | || ||||| || ||||| Sbjct 1370480 TTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 1370539 Query 67958 TACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTA 68017 ||| ||||||||| ||||||| |||| | || ||||||||||| |||||| || || Sbjct 1370540 AACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCACGACC-CA-TA 1370597 Query 68018 TGCTGTGATTC-CGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACA 68076 | | | | | | | ||| || | || | || | |||| |||||||| || | Sbjct 1370598 TAACAAGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 1370657 Query 68077 ACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTG 68136 |||| ||||| |||| ||| |||||||| || || || || || | ||||| || Sbjct 1370658 ACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCCGATCGCCGCAC 1370717 Query 68137 AACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAG 68196 || | |||| || ||||||| || || ||||| || || | | ||||| || || Sbjct 1370718 AAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAAAAATAG 1370777 Query 68197 GTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA--AGCA 68254 | | | |||||||| ||||| | |||| | ||||||||||| || || || | || | Sbjct 1370778 GCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGATAATAAATAGGA 1370837 Query 68255 AGTTGC 68260 |||||| Sbjct 1370838 AGTTGC 1370843 >seq581 Length=5673 Score = 113 bits (124), Expect = 5e-20 Identities = 177/253 (70%), Gaps = 13/253 (5%) Strand=Plus/Minus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| || ||||| || ||||||||||| | || ||| ||||||||| | || |||| Sbjct 5603 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAG----GGTAAAAGT 5548 Query 68119 GAAGACCGATTGCGTTTGAACTAGG----AACAACAGCACCAGAAATGATGT-----TGT 68169 | | ||||| || ||| |||| || || |||||||| || || | ||| Sbjct 5547 GCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAATATTGT 5488 Query 68170 TACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTG 68229 | || || | | ||||| | |||||| || | |||||||| ||||| |||||||| | Sbjct 5487 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 5428 Query 68230 CTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACA 68289 | || ||||| || || || || || | ||| | | ||| ||| |||||||| | Sbjct 5427 CAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAA 5368 Query 68290 CACCGAACCAACC 68302 |||||||||| || Sbjct 5367 CACCGAACCATCC 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566863674503760