Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1065 592 2e-164 seq7681 470 2e-127 seq21 327 1e-84 seq46 268 1e-66 seq9200 199 5e-46 seq581 187 3e-42 seq370 86.0 7e-12 >seq1065 Length=3091 Score = 592 bits (656), Expect = 2e-164 Identities = 742/1011 (73%), Gaps = 10/1011 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || |||||||| || | Sbjct 1423 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCT 1482 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| || || || || || || || ||||||| Sbjct 1483 GATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGGATATTTTTGGTGTAGA 1542 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 1543 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 1602 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| || |||| | || || | ||| |||| | ||| | || || | Sbjct 1603 GTAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTA 1662 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||||||||| ||||| | |||||| ||| |||| ||||||||| || | Sbjct 1663 CAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGG 1722 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| |||||||||||||| |||||||||||| ||||||| | || || | Sbjct 1723 ACCAAAAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCCGCTTGAGTTGGGTTAAAAG 1782 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 || ||| || || || ||||||||||| | ||||| || ||||| ||| | |||| Sbjct 1783 CTCGGAAGGTATTCGCACCATCACCATCTTCGAATAGAGTGTTTTCTACAGTAGCCCCAT 1842 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | || | | || || || |||||||||||||| |||| Sbjct 1843 GAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAAGGGGT 1902 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| ||||| ||||| |||||||| | ||| || | ||||||||| || |||| || | Sbjct 1903 TCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGCTACGC 1962 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||| ||||| || || || || || || || Sbjct 1963 CAAAACTCGGTGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACGGAAA 2022 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 ||||||| ||||| ||||||||||| | ||| ||||| || || | | | || ||| Sbjct 2023 CAAAAACCGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCTCA-ATTGAACAGAC 2081 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||||||||| ||||| || |||||||| ||||| || Sbjct 2082 CGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCG 2141 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || |||||||| || | || || Sbjct 2142 ACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCTGGT 2201 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| ||||| | | ||| || | | | || |||||| || || || ||||| || Sbjct 2202 CCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACCGCCGCCGTT 2261 Query 67425 AGAAAATTAGCA-CCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGT 67480 | ||||| ||| || || | || ||||| || | ||| || || ||||| || Sbjct 2262 AAGAAATT-GCAGCCTTCTAAATAGGAACTA---GCCAATCCATGGGTATACCAAGAAGT 2317 Query 67481 GACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAG 67540 ||||| ||||| || |||| ||| || || | || | ||||||| ||||| || | Sbjct 2318 TACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAA 2377 Query 67541 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||| |||||||| || ||||| || || || |||| | | |||||| || Sbjct 2378 TAGGCCAGACCATCCTACAAAAACGAAACGGTCTCTTCGTAACCAGTCGTC 2428 >seq7681 Length=829 Score = 470 bits (520), Expect = 2e-127 Identities = 472/613 (77%), Gaps = 0/613 (0%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| | ||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 613 AGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 554 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| ||||||| | Sbjct 553 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 494 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| |||||||||||||| || |||| ||| | ||||| Sbjct 493 AGATTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGT 434 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||||||| || || |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 433 GAACCAGATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 374 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||| | ||||| || || || || ||||| |||||||| || Sbjct 373 GAAACTAGCATATTGGAAGATTAATCGACCAAAATAACCGTGAGCAGCCACAATGTTATA 314 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || |||||||| | || || ||| ||||||||||||| Sbjct 313 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 254 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 253 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 194 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| || || | ||| || || || ||||| ||||||||||||||||| ||||| Sbjct 193 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 134 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||||||| || || | |||||| | |||||||| || Sbjct 133 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAGAAACTTCC 74 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||| | ||| || | || ||| || || | || ||||||||||| || || ||||| Sbjct 73 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 14 Query 68439 AACACAGATCCAA 68451 |||| |||||| Sbjct 13 AACAGCAATCCAA 1 >seq21 Length=3603864 Score = 327 bits (362), Expect = 1e-84 Identities = 446/616 (72%), Gaps = 5/616 (1%) Strand=Plus/Minus Query 68179 GACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCA 68238 || |||||||||||||| || | | || ||| || |||| ||||| |||||| ||| Sbjct 2754045 GATTCAGTTTCAGTGGTCTCCCTGATCAAACTAGAGGTTACCAAGGAACTATGCATAGCA 2753986 Query 68239 CTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGG 68298 ||||| || || || || ||||| ||||| || || | || || || || ||| | ||| Sbjct 2753985 CTGAATAG-GAACCGCCGAATACACCAGCTACACCTAAGATGTGAAATGGATGCGTAAGG 2753927 Query 68299 ATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGC 68358 |||||||||| ||| ||||| || | ||| |||||||||||||||| || || | || | Sbjct 2753926 ATGTTGTGCTGTGCCTGGAATACAACCATAAAGTTGAAAGTACCAGAGATTCCTAAAGCC 2753867 Query 68359 ATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCT 68418 || | | ||| || |||||||| ||| |||| || ||| | || | || ||| Sbjct 2753866 ATACCATTAGAAAAACTTCCTTGACCAGTAGGGTAGATCAAGAAAATAGCTGTAGCAGCT 2753807 Query 68419 GCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGT 68478 |||||||| | || || |||||| ||||||||||||||||| | || | |||| Sbjct 2753806 GCAACAGGAGTTGAATAGGCAACAACAATCCAAGGACGCATACCCAAACATCAACTAAGT 2753747 Query 68479 TCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGG 68538 ||||||||||| ||||| || | | ||||| | |||||| | | | || | Sbjct 2753746 TCCCATTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 2753687 Query 68539 AAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAG 68598 |||||||||||||||| ||||| ||||||| ||| ||||| |||| || ||||| Sbjct 2753686 CAAGGACCACCATTGTATAACCATTCATCAACAAATGCCGCTTCTCAAAGTGGGTAAAAA 2753627 Query 68599 TGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATAC 68658 || | | || || ||| ||||| || |||||||| || || ||||| ||||| Sbjct 2753626 TGCAATCTGATCGCTGCAGAAAAAGGAATAATGGCACCAGAGATAATATTGTTTCCATAA 2753567 Query 68659 AGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATG 68718 | | |||||| |||||| |||||||||||||| || || || || ||||| |||||| Sbjct 2753566 ATTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACTGGAGGAGCTGCGATG 2753507 Query 68719 AAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGA 68776 ||||||| || || || || ||||| | ||| || ||||||||||||| || || | Sbjct 2753506 AAGGCGATAATAAATACGGA-AGTTGCAGTCAATAAG-GTAGGGATCATCAAAACACCAA 2753449 Query 68777 ACCAACCAACGTAAAG 68792 |||| | | |||||| Sbjct 2753448 ACCATCGCATGTAAAG 2753433 >seq46 Length=2187656 Score = 268 bits (296), Expect = 1e-66 Identities = 348/479 (73%), Gaps = 3/479 (1%) Strand=Plus/Plus Query 68248 GATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGC 68307 ||| ||||| ||| ||||| || || | ||| || || || ||||| |||||||||||| Sbjct 1370349 GATGCACCAGCTACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGC 1370408 Query 68308 TCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCA 68367 ||| | | ||| || | ||| |||||||||||||||| || || | || ||| | ||| Sbjct 1370409 TCTACCTCGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGACATACCATCA 1370468 Query 68368 GAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGT 68427 ||||| |||||||||| || || | || ||| || || | || ||||||||||| Sbjct 1370469 GAGAAACTTCCTTGACCGATAGCGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGA 1370528 Query 68428 GCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCA 68487 || || ||||||||| ||||||||| ||||||| |||| | ||||||||| ||| Sbjct 1370529 GCTGAATATGCAACAGCAATCCAAGGATGCATACCCAGACAGAAATTAAGTTCCCACTCA 1370588 Query 68488 CGTCCCATGTATGCAAAGATAC-CAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACC 68546 || |||| ||| ||| ||| ||| | ||| || | | | || | ||||||| Sbjct 1370589 CGACCCA--TATAACAAGCTACACAAGTAAGAACTGTAGAACAATTAGCTCATAAGGACC 1370646 Query 68547 ACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACC 68606 ||||||||| ||||| |||||||| | ||| ||||||||||| || ||||| || | || Sbjct 1370647 ACCATTGTATAACCATTCATCAAGAGATGCAGCTTCCCAAATTGGGTAAAAATGCAATCC 1370706 Query 68607 AATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGA 68666 || || || | |||| || ||||||| || || ||||| ||||| || | || Sbjct 1370707 GATCGCCGCACAAGTTGGAATAATGTCACCAGAGATAATATTGTTTCCATAAAGTAAAGA 1370766 Query 68667 ACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 |||| || ||| | ||||||||||| || || | || | || || |||||||||| Sbjct 1370767 ACCAAAAATAGGCTTGCGAATACCATCAATATCTATTGGAAGGGCTGCAATGAAGGCGA 1370825 >seq9200 Length=658 Score = 199 bits (220), Expect = 5e-46 Identities = 220/288 (76%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 68540 AAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGT 68599 |||||||||||||||| ||||| ||||||| | ||| ||||||||||| || ||||| | Sbjct 638 AAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAAT 579 Query 68600 GAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACA 68659 | | || || || ||| |||||| || |||||||| || || ||||| ||||| | Sbjct 578 GCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAA 519 Query 68660 GAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGA 68719 | | ||||||| |||||| |||||||||||||| || || || || || || ||||||| Sbjct 518 GTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCGATGA 459 Query 68720 AGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAA 68777 |||||| || || || || | |||| | ||| || ||||||||||||| || || || Sbjct 458 AGGCGATAATAAATACGGAAG-TTGCGGTCAATAAG-GTAGGGATCATCAAAACACCAAA 401 Query 68778 CCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||| || | |||||| || || || ||| ||| | ||| | |||||| Sbjct 400 CCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATCCAGTTGCAGAA 353 >seq581 Length=5673 Score = 187 bits (206), Expect = 3e-42 Identities = 262/362 (72%), Gaps = 17/362 (5%) Strand=Plus/Minus Query 68475 AAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAG 68534 ||||||||| ||||| ||||| || | | ||||| | |||||| | | | || Sbjct 5668 AAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 5609 Query 68535 TTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATA 68594 | ||||||| |||||||| ||||||||||||| | ||| |||||||| || || Sbjct 5608 CTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA----GGGTA 5553 Query 68595 AAAGTGAAGACCAATTGCATTTGAACTAGG----AACAACAGCACCAGAAATGATGT--- 68647 |||||| | || || || ||| |||| || || |||||||| || || | Sbjct 5552 AAAGTGCAATCCGATCGCCGCAGAAGTAGGTAGGAATAATGGCACCAGAGATAATATAAT 5493 Query 68648 --TGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGG 68705 |||| ||||| || | ||||||| |||||| |||||||||||||| || || || || Sbjct 5492 ATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGG 5433 Query 68706 GGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATC 68763 || ||||||||||| |||| || || ||||| ||||| | ||| || ||||||||| Sbjct 5432 AGGGGCAGCGATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAAG-GTAGGGATC 5375 Query 68764 ATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAG 68823 |||| || |||||||| || | |||||| ||||| || ||| ||| | ||| | |||| Sbjct 5374 ATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAG 5315 Query 68824 AA 68825 || Sbjct 5314 AA 5313 >seq370 Length=13267 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 7491 CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 7432 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 7431 AGCTACTGAGGA 7420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571970122085520