Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq65 141 3e-28 seq63 131 5e-25 seq71 125 2e-23 seq4 107 6e-18 seq49 105 2e-17 seq8 104 7e-17 >seq65 Length=1719075 Score = 141 bits (156), Expect = 3e-28 Identities = 214/300 (71%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| |||||||| || | ||| |||||||| ||||| |||||| |||| ||||| Sbjct 671759 GCGATGAGACCACATTTCTCACATACATGGACTCTGTACGCATCACTCTGGTCAAATAGC 671818 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| ||| || || ||||||| |||||||||||| | ||||||||||||| Sbjct 671819 CTTTCCTTCAGGAAAAAAGCGGCTCCGTGTGCAATCATACAATCCCTCTCCATTTCACCG 671878 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||| ||||||||||| || | | || || || || || || ||||| | | | Sbjct 671879 AAACGGAGACCACCATCACGTGAACGCCCTTCTGCTGGTTGTCGGGTGAGTATCTGGACA 671938 Query 251584 GGACCGATGGAGCGGCT--ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 ||||| || | | |||| |||||||| ||||| |||||||| | ||||| Sbjct 671939 GGACC--ACGACCTCTTGAATGTATCTTATCATCCACCATGTGCTTGAGTCTTTGGTAAT 671996 Query 251642 ATGCGGGACCGATGAAGATGCTCGAAGGCA-TTTGCTCTCCAGTTAGAGCGTTATACATA 251700 ||| |||||| | ||| || | | | || ||| || |||||| || | || |||||| Sbjct 671997 ATGTGGGACCCAAGAAAATCATAGCGGTCAGTTTTCT-TCCAGTGTGACCATTGTACATA 672055 >seq63 Length=1736770 Score = 131 bits (144), Expect = 5e-25 Identities = 238/342 (70%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| || ||| ||||| |||||| || | | | || Sbjct 1024736 ATTTCTTACAGTACCATCATATTTAACCATGATGTCCTCCATAGCTTTCACAAGTCTCCG 1024677 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || ||||| ||||| ||| || || |||||| ||||||| ||||| | | |||||| Sbjct 1024676 TTGGATATAGCCAGTCTCAGAAGTCTTCACAGCTATATCAATCAGACCTTCTCTACCACC 1024617 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGA 302716 ||||||||||||||| | |||| || ||| ||||| || | || |||| || | Sbjct 1024616 CATAGCATGGAAGAAAAATTCTTGAGG-CGTCAGCCCTTGAAGGTAAGAATTCTCCACAA 1024558 Query 302717 AACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TC 302774 | ||||| || || || ||| || || || ||||||| || | | || | Sbjct 1024557 ATCCACGACTTTCAGGACCATAGTCATCTTTCGTGAAATGTGGCAATGTTC-GATCAATG 1024499 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | || ||||||||||||| || ||||| ||||||||||| | || | | |||| || Sbjct 1024498 A-AACCAAATGGGATACGCTTGCCCTCAACATTCTGCTGTCCAACACAAGCAGTCATTTG 1024440 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 |||||||| | |||||| || || || ||| | ||||| Sbjct 1024439 TGAAATATTAATGAAACTGCCTTTTGAACCTGCAGTAACCAT 1024398 >seq71 Length=1586662 Score = 125 bits (138), Expect = 2e-23 Identities = 231/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| ||||| |||||| || | | | || Sbjct 1111393 ATTTCTTACAGTACCATCATATTTGACCATGATGTCCTCCATAGCTTTCACAAGTCTCCG 1111452 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || || || |||||||| ||||| | | |||||| Sbjct 1111453 CTGGATATAGCCAGTCTCAGAAGTCTTCACGGCAGTATCAATCAGACCTTCCCTACCACC 1111512 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | |||| ||| ||||| | || | ||| |||| || || Sbjct 1111513 CATAGCATGGAAGAAAAATTCTTGAGGTGTCAGCCCTCGAAGGTAAGAGTTCTCCACAAA 1111572 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || || ||||||| || | | | | Sbjct 1111573 TCCACGACTTTCAGGACCATAGTCATCTTTTGTGAAATGTGGCAATGTTCGATCGATAAA 1111632 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || |||||||||| || || ||||| ||||||||||| | || | | |||| || || Sbjct 1111633 ACCAAATGGGATACGTTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGTGA 1111692 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| || | |||||| || || || || | ||||| Sbjct 1111693 AATGTTAATGAAACTGCCTTTTGAACCGGCCGTCACCAT 1111731 >seq4 Length=6248241 Score = 107 bits (118), Expect = 6e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 |||||| ||||| || || |||||||| | |||||| |||| || |||||||| ||| || Sbjct 1174906 GCCACCTTGATCAACGTAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 1174847 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 ||||||||| ||||| ||||| ||||||| ||||| | |||| ||| |||| Sbjct 1174846 ATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGA 1174787 Query 156182 TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAAT 156241 | ||||| || || | |||| || ||| |||||||| | ||||| | || Sbjct 1174786 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 1174727 Query 156242 ACCTTCAATAGAATCATCTTCCAT 156265 || ||||| ||||||| ||| Sbjct 1174726 TCCCTCAATGCTGTCATCTTTCAT 1174703 >seq49 Length=2122476 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 |||||| ||||| ||||| |||||||| | |||||| |||| || |||||||| ||| || Sbjct 612189 GCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 612248 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 ||||||||| ||||| ||||| ||||||| ||||| | |||| ||| |||| Sbjct 612249 ATTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAA 612304 >seq8 Length=5380884 Score = 104 bits (114), Expect = 7e-17 Identities = 340/512 (66%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | ||| || ||||| |||| ||| || || Sbjct 1265140 CTGTCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCA 1265081 Query 288910 GCCAATACAACAATAGATTCG---GTTTGCTT-AAATCCATCCATACTTGTTAAAATTTG 288965 || |||| ||||| |||| ||| ||| ||| |||||||| || |||| || Sbjct 1265080 GC-AATA--ACAATT-ATTCCAGTGTTCCCTTCAAAACCATCCATCTCGGTCAAAAGCTG 1265025 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 || || || || ||||||||||||||| ||| | || ||| | | ||| | Sbjct 1265024 GTTCAGGGTCTGCTCCCTTTCATCATTTCCACCACCG--AT-ACCAGTTCCTCTCTGCCT 1264968 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 | ||||||||||||||||| |||| || | | || || | ||| | | || | Sbjct 1264967 T---CCAACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTT 1264911 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||| | || | ||||||||||| |||| ||| ||| |||| || || || ||||| Sbjct 1264910 CTTAAACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGA 1264851 Query 289146 AGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | |||| | || | ||| | || ||||| ||||| | |||| | || || | | Sbjct 1264850 GCCCGATA-TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAG 1264792 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 ||||||| || ||||| || || | | ||||| || || || | || ||| ||| Sbjct 1264791 TCTTACCGGTCCCAGGAGGACCAACAAGCAGAACACCGTTAGGAATGCGAGCACCAACAG 1264732 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCC 289323 | || | || || |||| || || || || | |||| | ||| || | || || Sbjct 1264731 CAGTGAATCTTTCTGGTTTCTTCAAGAACTCAACGACTTCCATGAAG-TCTTGCTTCGCT 1264673 Query 289324 TCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 ||||| ||| || || |||||| |||| |||| Sbjct 1264672 TCATCGACA-CCAGCAACATCATCAAATGTAA 1264642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471595343583882