Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1065 578 4e-160 seq7681 441 8e-119 seq21 260 2e-64 seq46 237 2e-57 seq581 141 1e-28 seq9200 136 4e-27 >seq1065 Length=3091 Score = 578 bits (640), Expect = 4e-160 Identities = 736/1008 (73%), Gaps = 4/1008 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 || |||||| | | |||| || || |||||||| || |||||||| ||| | || || Sbjct 2428 GACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 2369 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 2368 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2309 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGT 159484 || ||||| || | |||||||||||| | || || ||| || || | || || || || Sbjct 2308 TATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTTAACGGCGGCGGT 2250 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| | | | | || ||| | | ||||| ||||| || || | || Sbjct 2249 TTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGCACA 2190 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 ||| |||| || ||||| ||| | || || | |||| |||||| || ||||| || Sbjct 2189 AGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGG 2130 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTA 159663 || || || ||||| ||||||||| | ||||| |||||||| || || ||| | | Sbjct 2129 GGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT- 2071 Query 159664 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 | | ||||| ||||| ||| | ||||||||||| || || |||||||| ||| |||| Sbjct 2070 TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTATTCC 2011 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || || ||| |||| || || ||||||| || || ||| ||||| || ||||| | Sbjct 2010 TTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCTA 1951 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||| ||||| | | ||| | ||||||||||| || |||||||| || ||||| |||| Sbjct 1950 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCATA 1891 Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903 ||||||||||||| || || |||| | || || || | || || ||||| | ||||| Sbjct 1890 TGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTACTG 1831 Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963 |||| ||||| || | |||||||| || || |||||||| || ||| | ||| Sbjct 1830 TAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACCCAA 1771 Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160023 |||||| ||| || ||||| || ||||| ||||| |||||||| ||||| || ||||| | Sbjct 1770 CTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTG 1711 Query 160024 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGG 160083 || |||| ||||| || || || ||| | |||||||| ||| | ||||| || || | | Sbjct 1710 GTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCG 1651 Query 160084 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATT 160143 || | |||| |||||||| | ||||||| ||||| || || ||||| || || | Sbjct 1650 GTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACT 1591 Query 160144 TCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 160203 |||| || || ||| | ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 1590 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAA 1531 Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263 | ||||| || ||||| || | ||||| ||| ||||| || ||||| || ||||||| Sbjct 1530 ATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAA 1471 Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 1470 ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 1423 >seq7681 Length=829 Score = 441 bits (488), Expect = 8e-119 Identities = 467/613 (76%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 157955 TGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTAT 158014 ||||| ||| |||||||| ||||| || || || || ||||||| ||| | | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 158015 CCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAAC 158074 ||| | |||||||| |||||| |||| ||||||| | || |||||||||||||| ||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 158075 TACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGT 158134 | ||| |||||||||| ||||| ||||||||||||||||| || || || ||| | ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 158135 GTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCC 158194 || ||||| |||||||| || || || ||| ||||||||| || | || || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC- 240 Query 158195 TCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCA 158253 | | | || | ||||| ||||||| || || || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 158254 AGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCA 158313 |||||||||||| |||||||| || || || || || || || ||||| || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 158314 ATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGT 158373 ||| ||| ||||||||||| ||||| || ||||||||| | ||||| |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 158374 CGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAA 158433 || ||||||||||| || | || | || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 158434 CTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACT 158493 |||||||| || | ||||| | || ||||| || | || || ||||| ||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 158494 GAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACT 158553 ||||| ||| ||||||||||||||| ||||| || ||||| || ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 158554 CGACCTTGCTGCT 158566 ||| | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 260 bits (288), Expect = 2e-64 Identities = 419/597 (70%), Gaps = 4/597 (1%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | | | ||||| ||||| || | || || | | ||||| || || || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| || || || || |||||||| |||| ||||| Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCC 2753518 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || |||||| | || ||||| ||||| Sbjct 2753519 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAA 2753578 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || | ||| || || | | || || || || | Sbjct 2753579 TATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACT 2753638 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 || ||||| |||| ||||||| ||| | || || |||||||||| | || | || Sbjct 2753639 TTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGT 2753698 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | |||||| | ||||| | | || ||||| ||||| ||||||||| | | Sbjct 2753699 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATG 2753758 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 ||| |||||||| || ||||| ||| || ||||| |||| || || || || | || Sbjct 2753759 TTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGC 2753818 Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058 | | ||| | |||| ||| |||||||| ||| || ||| |||| || | || || Sbjct 2753819 TATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAAT 2753878 Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118 |||||||||||| |||| ||| |||||||||| ||| | ||||||||||||| ||| || Sbjct 2753879 CTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCC 2753938 Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 158175 || || || | ||||| ||||| |||||||| || || || ||| ||||||||| Sbjct 2753939 ATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 2753994 >seq46 Length=2187656 Score = 237 bits (262), Expect = 2e-57 Identities = 358/504 (71%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 157655 TTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGAC 157714 ||| | ||||| || ||| || |||||||| | || || | || | || || || Sbjct 1370849 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 1370791 Query 157715 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 157774 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 1370790 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 1370731 Query 157775 GTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 157834 || | ||| ||| || || || | || || || || || |||||||| ||||| Sbjct 1370730 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 1370671 Query 157835 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATT 157894 |||||||| ||| | || || |||||||||| | || | || | || ||| | || Sbjct 1370670 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 1370611 Query 157895 G-GTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCC 157953 | ||| || || || ||||| ||||||||||||||| | | || | ||||||| || Sbjct 1370610 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 1370553 Query 157954 CTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTA 158013 ||||| ||| |||||||| ||||| || || || || ||||||| ||| | | || Sbjct 1370552 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 1370493 Query 158014 TCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAA 158073 || |||||||||| |||||| |||| |||| || | || |||||||||||||| || Sbjct 1370492 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 1370433 Query 158074 CTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGG 158133 || ||| |||||||| | | ||| ||||||||||||||||| || || || ||| | || Sbjct 1370432 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 1370373 Query 158134 TGTTGCTGGGGTATTCGGTGGATC 158157 ||| ||||| ||| |||| ||| Sbjct 1370372 TGTAGCTGGTGTAGCTGGTGCATC 1370349 >seq581 Length=5673 Score = 141 bits (156), Expect = 1e-28 Identities = 250/361 (69%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| || || |||| ||| ||||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 157759 CATCAT-----CTCTGGTGCAGTTGT----ACCATCTTCCAACGCAATTGGTCTTCACTT 157809 || || ||||||||| || | ||| |||| || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 157810 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 157869 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 5552 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 157870 ACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACT 157929 || | || | |||||| | ||||| | | || ||||| |||||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Query 157930 T 157930 | Sbjct 5668 T 5668 >seq9200 Length=658 Score = 136 bits (150), Expect = 4e-27 Identities = 204/287 (71%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| || || || || |||||||| |||| || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || |||| || || || | || || || || || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 157865 |||||||| ||||| ||||||| ||| | || || |||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548293610741520