Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1065 661 0.0 seq7681 432 4e-116 seq21 288 1e-72 seq46 259 5e-64 seq581 165 9e-36 seq9200 158 1e-33 seq1856 102 9e-17 >seq1065 Length=3091 Score = 661 bits (732), Expect = 0.0 Identities = 762/1017 (75%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || ||||||||||||||||||| || |||||||| Sbjct 2440 TTTGATATTATGGACGACTGG-TTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGG 2382 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||||||| Sbjct 2381 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 2322 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTC 152536 | || ||||||||| || || ||||| ||||||||| | || ||| |||| |||| Sbjct 2321 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAA--TTTC 2264 Query 152537 TTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 ||| | ||||| ||||| || || || || | | | || ||| | |||| || ||| Sbjct 2263 TTAACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGG 2204 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 || || || || ||||||||||| | ||| ||| | || || || ||| ||||| Sbjct 2203 GGACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 2144 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCA 152715 || || ||||| |||||||| || ||||| ||||||||| | || || |||||||| || Sbjct 2143 GTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 2084 Query 152716 CG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 152774 || ||| || | | | || || ||||| ||| | ||||||||||| ||||| ||||| Sbjct 2083 CGGTCTGTTCAAT-TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTT 2025 Query 152775 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 152834 |||| ||| || || || || || ||||| ||||| ||||||| || || || ||| Sbjct 2024 TGTTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTT 1965 Query 152835 CGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATT 152894 || || ||||| || || |||||| | || ||| | |||||||| || || ||||| || Sbjct 1964 TGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTT 1905 Query 152895 GAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCAT 152954 ||| || |||||||||||||| ||||| || | || || | ||| |||| | || || Sbjct 1904 GAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTAT 1845 Query 152955 TCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAA 153014 |||||| | ||| ||||| || ||| | | |||||||||| || || || ||| Sbjct 1844 TCATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCG 1785 Query 153015 AGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTG 153074 |||||| || ||||||| ||||| || ||||| ||||||||||||||||| || || Sbjct 1784 AGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTG 1725 Query 153075 GTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTT 153134 |||||| || ||||| |||||||| ||||||||| ||| | |||||||||||||| || Sbjct 1724 GTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 1665 Query 153135 TGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCT 153194 |||||| || | ||| | |||| | ||||||| | |||| || ||||| || || Sbjct 1664 TGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCT 1605 Query 153195 TCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGAC 153254 ||||| || || || || || || |||||| | || | |||||||||||||||||||| Sbjct 1604 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 1545 Query 153255 GTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGA 153314 ||||| || || ||||||||||| ||||| ||| ||||||| ||| ||||| || || Sbjct 1544 TTTCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 1485 Query 153315 CCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || |||||||| || | | |||||||| ||||| | ||||| || |||||||| Sbjct 1484 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 432 bits (478), Expect = 4e-116 Identities = 465/613 (76%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 151214 TGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTA 151272 ||||| ||| |||||||| || ||||| ||||| ||||| | ||| || ||| | | || Sbjct 2 TGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 151273 TCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAA 151332 ||| | |||||||| ||||||||||| ||||| | || || ||||| || ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 151333 CTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGG 151392 || ||| |||| ||||| |||||||||||||| || ||||| || || || ||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 151393 TGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTC 151452 ||| |||||||| ||||| || || || ||| || ||||| ||||| |||| || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 151453 TTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCA 151512 | || | | || ||||| ||||| || || || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 151513 AGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCA 151572 ||| |||||||| || ||||| || || || |||||||| |||||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 151573 ATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGT 151632 ||| ||| |||||||| || ||||| | ||||||||| | || || |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 151633 CGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAA 151692 || |||||||||||||| | ||| | || || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 151693 CTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCT 151752 |||||||| || | | ||| | || || || | || || ||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 151753 GAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCT 151812 |||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 151813 CGACCTTGCTGCT 151825 ||| | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 288 bits (318), Expect = 1e-72 Identities = 424/598 (71%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 150884 TGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCATTTGC---TTCATCGTG 150940 ||||| ||||| ||||||| || || | ||| | ||||| || | || || | Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAAC---TTCCGTATTTATTATC 2753501 Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || |||||||| ||||| || || || || ||||| || ||||| || ||| ||||||| Sbjct 2753502 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCT 2753561 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 | || || || ||||| || ||||||||||| || |||||| |||| || ||| | Sbjct 2753562 TTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGA 2753621 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 |||| || || || | || ||||| || | | | ||||||||| | ||||| |||||| Sbjct 2753622 TTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGT 2753681 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAG 151180 |||| | || |||| | |||||| | ||||| | | ||| ||||||||||| Sbjct 2753682 CCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAA 2753741 Query 151181 TGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCA 151240 |||||||| || | |||||||||||||| ||||| ||||| || || |||| Sbjct 2753742 TGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCT 2753801 Query 151241 GTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 151300 ||||| ||||| | || | ||| | |||| ||| |||||||| ||| ||| || Sbjct 2753802 GTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAAT 2753861 Query 151301 GCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 151360 | ||| | | || || ||||| || ||||||| ||| |||| ||||| ||| ||||| Sbjct 2753862 GGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCAC 2753921 Query 151361 AACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTC 151420 ||||| || | ||| || || || || | ||||| |||||||| ||||| || || || Sbjct 2753922 AACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTA 2753980 Query 151421 TTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAA 151478 ||| || ||||| |||| |||| || ||| || | | |||||||| |||| Sbjct 2753981 TTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGAAA 2754038 >seq46 Length=2187656 Score = 259 bits (286), Expect = 5e-64 Identities = 341/466 (73%), Gaps = 5/466 (1%) Strand=Plus/Minus Query 150941 GCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCT 151000 || ||||| || || | || | || || ||||| || || | || || ||||||| Sbjct 1370823 GCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTTCT 1370764 Query 151001 CTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGT 151060 | | || || ||||| || |||||||||| || |||| ||| | || ||||| Sbjct 1370763 TTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCGGA 1370704 Query 151061 CTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGT 151120 |||| || || || || |||||||| || ||||| ||||||||| | ||||| |||||| Sbjct 1370703 TTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGT 1370644 Query 151121 CCTTTCCAACTCGTTGTCTTCCACTTCCTGATTG-GTATCTATGCTTACATGGGTCGTGA 151179 |||| | || |||| | || ||| | ||| ||| || || ||| ||||||||||| Sbjct 1370643 CCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATATGGGTCGTGA 1370586 Query 151180 GTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTC 151238 ||||||||| || | | ||||||||| ||| ||||| ||| |||||||| || |||| Sbjct 1370585 GTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTC 1370527 Query 151239 CAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 151298 | ||||| ||||| | ||| || ||| | | || || |||||||||| |||||||| Sbjct 1370526 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTCTG 1370467 Query 151299 ATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGC 151358 ||| ||| | | || || ||||| || ||||||| ||| |||| ||| | | ||||| Sbjct 1370466 ATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 1370407 Query 151359 ACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 ||||||| || ||||| || || || ||| | ||||| |||||||| Sbjct 1370406 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq581 Length=5673 Score = 165 bits (182), Expect = 9e-36 Identities = 236/332 (71%), Gaps = 13/332 (4%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||||||||| ||||||| || || | ||| | ||||| Sbjct 5340 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 5399 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || ||||||||||| || || || || || ||||| || ||||| Sbjct 5400 TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAG 5459 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACA-----ACATCATCTCTGGTGCTGTTGTT- 151039 || ||| |||||||| | | || || |||| | || ||||||||||| || || Sbjct 5460 CCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTC 5519 Query 151040 ---CCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTC 151096 ||| ||||| || ||||| ||||||| || | ||||||||| || ||| | Sbjct 5520 CTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGCATCTGTT 5575 Query 151097 GATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGT 151156 ||||| ||| | ||||| || ||||||| | || |||| | |||||| | ||||| Sbjct 5576 GATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 5635 Query 151157 ATCTATGCTTACATGGGTCGTGAGTGGGAACT 151188 | | ||| |||||||||||||||||||| Sbjct 5636 GTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 >seq9200 Length=658 Score = 158 bits (174), Expect = 1e-33 Identities = 193/262 (74%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 || ||||| || |||| ||||| ||||| ||||||| || || | ||| | ||||| Sbjct 380 AATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAAC- 438 Query 150926 ATTTGC---TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGT 150982 || | || || | || |||||||| || || || || || || ||||| || ||| Sbjct 439 --TTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGT 496 Query 150983 GAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCT 151042 || || ||| |||||||| | | || || ||||| || ||||||||||| || ||||| Sbjct 497 GAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 556 Query 151043 TCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAA 151102 ||||| || ||||| |||| || || || || |||||||| || ||| | |||||| Sbjct 557 ACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAA 616 Query 151103 TGGCTCTACAACGGTGGTCCTT 151124 ||| | ||||| |||||||||| Sbjct 617 TGGTTATACAATGGTGGTCCTT 638 >seq1856 Length=2117 Score = 102 bits (112), Expect = 9e-17 Identities = 122/163 (75%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||| | || ||||| || Sbjct 1189 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGG 1131 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG----CGGTTGGCTTACTGGGACTA 152473 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||| Sbjct 1130 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTA 1071 Query 152474 CTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTA 152516 |||| | || ||||||||| || || ||||| |||||||| Sbjct 1070 CTTTTGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTA 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549541426879920