Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq7681 367 1e-96 seq1065 345 5e-90 seq21 215 6e-51 seq46 197 2e-45 seq9200 138 1e-27 seq581 129 7e-25 seq1856 89.7 6e-13 >seq7681 Length=829 Score = 367 bits (406), Expect = 1e-96 Identities = 449/610 (74%), Gaps = 2/610 (0%) Strand=Plus/Plus Query 72609 TTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTA 72668 |||||| ||| ||||| ||||| ||||| | || || ||| || ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 72669 TCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAA 72728 || | ||||| || ||||||||||||||||| |||| ||||| ||||| ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 72729 CTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGG 72788 ||| ||| | || ||||| ||||| |||||||| || ||||| || || || ||| ||| Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 72789 TGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTC 72848 |||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 72849 ATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACA 72908 | | ||||| || || || || || || | || | || || || || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 72909 AGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCA 72968 ||| ||||| || ||||||||||| |||||||| || || || ||| ||||||||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 72969 GTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGT 73028 ||||| ||||||||||||||||| |||||||||||| | |||| | |||||||| Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 73029 CTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAA 73088 | | ||||| || | | ||||| |||| |||||||||||||| || || ||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 73089 CTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTC 73147 ||||||||||| || || ||| || || || || | || |||| ||| | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCA 539 Query 73148 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 73207 | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||||||| | Sbjct 540 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 599 Query 73208 TAGACCTAGC 73217 ||||| |||| Sbjct 600 TAGACTTAGC 609 >seq1065 Length=3091 Score = 345 bits (382), Expect = 5e-90 Identities = 699/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| ||||| |||||||| || | ||||||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAATTTCTTA 2261 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || || || || || |||| | || | | | || | | ||| | || |||||| Sbjct 2260 ACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 2201 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 ||||| |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 2200 CCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTC 2141 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 2140 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 2081 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | | ||||| || ||| | | || || | ||||| || || Sbjct 2080 TCTGTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTT 2021 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | | || || || ||||| | || || | |||||||||| ||||| || || Sbjct 2020 TCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGC 1961 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 1960 GTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 1901 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 || |||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 1900 CCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 1841 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || || || || |||| ||| | ||| || || | ||| ||| || | Sbjct 1840 GGGGCTACTGT--AGAAAACACTCTAT---------TC-GAAGATGGTGATGGTGCGAAT 1793 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 || ||| |||| || | || || || | ||||| |||||| ||| || Sbjct 1792 ---------ACCTTCCGAGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTT 1742 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 ||||||||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 1741 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 1682 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 1681 CATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTT 1622 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || || || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 1621 GGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 1562 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || || ||| | || || ||||| | || Sbjct 1561 GATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCG 1502 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| || || ||||| || ||||| || || | ||||| || || || | ||| Sbjct 1501 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 1442 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 1441 CGTGGAAACGCTCTTTAA 1424 >seq21 Length=3603864 Score = 215 bits (238), Expect = 6e-51 Identities = 411/597 (69%), Gaps = 9/597 (2%) Strand=Plus/Plus Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 72338 ||||||||||| || |||||||| | ||| | ||||| || | || ||| | || Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCCGTATTTATTATCGC 2753503 Query 72339 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 72398 |||||||| ||||||||||| ||||| || || || | || || ||| |||||||| Sbjct 2753504 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTT 2753563 Query 72399 CTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATT 72458 | ||||| ||||| || ||||||||||| | |||| | ||| || || |||| Sbjct 2753564 AATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 2753623 Query 72459 ACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCC 72518 || || || || | || ||||| || | | || || ||||| || || || ||||| Sbjct 2753624 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 2753683 Query 72519 TTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTG 72578 || || || || || | |||||| | |||| | || || |||||| | | || Sbjct 2753684 TTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATG 2753743 Query 72579 GGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT 72638 |||||| | | | || ||| | |||||||| ||| || || ||| | ||||| Sbjct 2753744 GGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGT 2753803 Query 72639 ATCTGCAGCATTTGCAG-TA-TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGA 72695 |||||| | ||| || || |||| | || || ||||| || || ||| | Sbjct 2753804 ---TGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2753860 Query 72696 TGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACA 72755 ||||||| | |||| ||||| ||||| |||||||| ||| | || ||||| ||| | || Sbjct 2753861 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCA 2753920 Query 72756 CAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCT 72815 |||||| || | ||| || || || || ||||||||| ||| | ||||| ||| || Sbjct 2753921 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGT-TCCT 2753979 Query 72816 CTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGA 72872 |||||||| ||||| |||| | || || || | | ||||| ||||| || || Sbjct 2753980 ATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 197 bits (218), Expect = 2e-45 Identities = 327/471 (69%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 72328 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 72387 || ||| | || ||||| || || | |||| | ||||| || || || | | || || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 72388 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 72447 |||||||| | ||||| ||||| || |||||||||| | ||||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 72448 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAT 72507 || || ||||| || || || || || |||||||| || || | || || ||||| || Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 72508 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 72567 || || |||||||| || || || || | || ||| ||| | | | || || ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 1370594 Query 72568 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 72627 ||| | |||||||||| | | | || || ||| |||||||| ||| ||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 72628 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 72687 ||||| ||||| | || || ||| || ||| | | || | ||||||| || Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 ||||||||||||||| | |||| ||||| ||||| |||||||| ||| | || ||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 72798 | ||| |||||||| || ||||| || || || ||| ||||||||| ||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 1370363 >seq9200 Length=658 Score = 138 bits (152), Expect = 1e-27 Identities = 211/298 (71%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || ||||| | ||| | || ||||||||||| || |||||||| Sbjct 362 TGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC- 420 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || | || ||| | || |||||||| || |||||||| || Sbjct 421 TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGA 480 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 481 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 540 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| || || ||||| || || || || || |||||||| Sbjct 541 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGC 600 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCAC 72540 || || | || || ||||| || || || |||||||| || || || || | ||| Sbjct 601 TGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 658 >seq581 Length=5673 Score = 129 bits (142), Expect = 7e-25 Identities = 241/351 (69%), Gaps = 15/351 (4%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 5322 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 5380 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 5381 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 5440 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACA-----ACATC 72417 ||| || || || | || || ||| | |||||||| | ||||| |||| | || Sbjct 5441 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATT 5500 Query 72418 ATCTCTGGTGCTGTAGTT----CCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 ||||||||||| | || || |||| || || ||||| ||||| || | Sbjct 5501 ATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC---- 5556 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 ||||||||| || || | || |||||||| || || || |||||||| || || || | Sbjct 5557 CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 5616 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 72584 | | |||||| | |||| | || || |||||| | |||||||||| Sbjct 5617 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 >seq1856 Length=2117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || |||||||| || || |||||||| || Sbjct 1189 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 1130 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGT----AGGAACTAC 73479 || || || || ||||||||||| | || | || |||||||| || ||| ||||| Sbjct 1129 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTAC 1070 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTG 73511 ||| || || || ||||| || ||||| |||| Sbjct 1069 TTTTGTAACTTCTTGGTATACCCATGG-ATTG 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572789201396880